barSeed - Barley Seed Development Database

Probe CUST_9633_PI390587928

Source Contig U35_18917

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9633_PI390587928	Hv_44K_v2	GGTTGCTGGATGAATTCTGCGTTGTGCTTAATGGATGTCTAGACTCCGTGTTGCAAAAAA	777	GeneList: darkolivegreen MasterList: Structural_proteins_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.156	0.558	0.914	1.726	1.173	1.763
Raw	106.154	597.520	863.381	2612.396	608.371	985.962

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60747.1	1001	3e-22	101 - 156	100	56 / 56	minus	ABC09283
JLOC1	JLOC1_39638.1	1516	1e-22	674 - 729	100	56 / 56	minus
Harvest35	U35_18917	848	3e-25	778 - 837	100	60 / 60	plus

Contig Sequence (848 bp)

>U35_18917 848 Hv_44K_v2
TTCACCCCGCTTTCTGCACCACAGTACAGTAGCTTCGGTCCGGTCATCGTCACCGCTGAC
GAGTGTCTCGCTTTGCGAGGAGCGCGTGGCATCAGCCCGGCGCAGCTAAACAAACCACTG
AACCCGACGAGCGACAAGTTTCGAGCAAGAGCTCATCCATATCCCCCATTTCCCCCTCTA
CCCAAGAGACCAACAACGATGGCCTCGGAGCCGGCGGTCGTCCACAGCGGCGGGTGCCAC
TGCCGGCGCGTGCGGTGGCAGGTGGAGGCGCCGGCGAGCGTGGTGGCGTGGATCTGCAAC
TGCTCCGACTGCTCCATGCGGGGGAACACCCATTTCGTCGTGCCCAAGGACAAGTTCGCG
CTCCAGGCCGGCGCCGCCGAGTTCCTCACCACCTACACCTTCGGCACCCACACGGCCAAG
CACACCTTCTGCAAGGTGTGCGGGATCACCTCGTTCTACATCCCGAGGTCCAACCCCGAC
GGCTTCGCCGTCACCGCGGCCTGCATCGACCCCGGCACCCTGGCGCACGTCGAGTACAGG
AAGGCGGACGGGAGGAACTGGGAGGACTGGATCGAGGGGAGCGGCATCTCCGAGTTCTCC
AAGCCCGCGGCAGCCGAGTAGGACCTGCCATGGCCTGTGTGCGGTTCAGGATTTCAGGTC
AGTTTGGTTCGTGGCTGCGGGCTGAAATTCTTCTCCTTGTTAGCGAAAAGTATGTGAGAA
TAAACGTGGATATGGTAGTCTGAATTCTTCTCCTTGTTAGTGAAAAGTTTGGTTGGTGGT
TGCTGGATGAATTCTGCGTTGTGCTTAATGGATGTCTAGACTCCGTGTTGCAAAAAAAAA
AAAAAAAA

Homology of Contig U35_18917 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g23370.2	150	2e-79	protein\|proline-rich protein 6, putative, expressed
Brachypodium v1_2	Bradi4g29740.1	141	1e-86
Arabidopsis v10	AT5G16940.1	135	3e-62	carbon-sulfur lyases \| chr5:5571797-5572204 REVERSE LENGTH=135