barSeed - Barley Seed Development Database

Probe CUST_9616_PI390587928

Source Contig U35_18935

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9616_PI390587928	Hv_44K_v2	GTTGTTCTGAGCTTGTCGGATATTTGTGTGTTGTGACTTTTGTATTATGCTGTGTTAGCT	1388	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.451	1.500	1.171	1.063	0.427	0.288
Raw	611.693	989.366	682.912	933.079	138.188	100.394

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_17234.1	1778	8e-25	1601 - 1660	100	60 / 60	plus
Harvest21	ABC16188	653	3e-25	1 - 60	100	60 / 60	minus	ABC16188
Harvest35	U35_18935	1448	3e-25	1389 - 1448	100	60 / 60	plus

Contig Sequence (1448 bp)

>U35_18935 1448 Hv_44K_v2
AAGAAGGACCTCCTCCGGCCGCGCAGACGCCGACGCGCCTCTTCACCCCCACGTCCTCCG
GCCGCGCCTCTTCGCCCTCCCCACCTCCCAACCTCCTCCGGCCGCGCAGAAGCCGGCGCG
CCTCTTCACCTCCACCACCTCCGGCCGCGCAGACGCCGGCGCGCCTCTTCACCTCCACCA
CCTCCGGCCGCGCAGACGCCGGCGCGCCTCTTCACCTCCACCACCTCCGGCCGCGCAGAC
GCCGGCGCGCCTCTTCACCTCCACCACCTCAACGTTGGATCGCCTGCTGCCTGACGCCGG
AGTCCCGCCGCCACCCACGCTCCCATGACGACATCACCTTTAGTGGCCCTGTTCTCCAAA
TCACCGATGGACTCTGGGCTGGATTCCATTAGACAGGAGTTTGTGCCGTTTATTGCGCCA
TCGTTGGAGGAGCTGCTGCCGCAGCTATCCCTTGAGGAGCGGGTACGACTGCAGACTCAC
CTACGCGAGCACGAGCGCAAAGTGAAGCGATGGAGTAAGTGCCCTACATTACCTTCAGGC
GCCCCCTCAGAAAGAAAGCGCGACAACATGATCATAGCTCACGTCCGCCACGCTCTCCAC
TATTACAATGCCAGGCACCCGGGTGACGAATTTGATGTTGTGAAGCCTCTGATGGAATCC
AGAGCTACTTTCAGGAAACAGCAGTGGGCCCACGTCAACTTCTGGGCTCGCAGCCGCAAA
AGCAATAAAATCAAGCGCTTCTTTGCTGAGGTGCACTACAACCCAAAACCTATCGTTGAA
GTGTGCACCATCATCGGTATGTAACTATGTCTATAACCTCATTTCTTAACTGGTTTATTA
CTTTTGATTAATGTGTTTAACATGCATGCTCTTGCAGAAGAGCCTCTTGACCGGTACAGG
AAGAGCTGCGCATTCTGTCCTGGCAACCGGGACATTTTGCACCCTGTTGGTTCCCGTAAG
TTTGTTTGTGGAAATGACAAGGACAGGATGTTGCAACAATTCAAGCCTCGTCCATTCTCT
GAATTTCGTGGAATGCCATTCACTTGCTGCCCGAGTTCGGCCTCCCCCACCATTCAAGAG
GAAGAATCAAAGCGAAAATTCTGAATTGGCCCCTGGGATGCTCACTGTGGCCGTCTGTAG
TTCCTAACCATGGTGGTCGATTCAGGCCACATTAGCAGATATATGGAATAAATATTCGTA
GATGTTGTGCAGGACATAGACGTGGTATTACATCTTGAATATTGTTCTCCTAAGCTTGTT
GGTTATTTGTGTGTGTTTGCATCAGCAATGGATCAGGTCAGGTGACATTTAGCAGATATA
TGGAATAAATAGTCGTAGATGTTGACATGTTGTGTAGATATACAAATGGTATGTGATCTT
TGGATATTGTTGTTCTGAGCTTGTCGGATATTTGTGTGTTGTGACTTTTGTATTATGCTG
TGTTAGCT

Homology of Contig U35_18935 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g13490.1	221	3e-55	protein\|expressed protein
Brachypodium v1_2	None
Arabidopsis v10	None