barSeed - Barley Seed Development Database

Probe CUST_9610_PI390587928

Source Contig U35_18941

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9610_PI390587928	Hv_44K_v2	GAAGCCTTAGGTATACGTACAATTATCGGCTTGTAATATGTTCCTAGTGCTATACTTCTC	937	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363708	3276	2e-24	2995 - 3054	100	60 / 60	plus	ABC10257
MLOC	MLOC_52763.1	180	3e-21	73 - 132	97	58 / 60	minus	ABC10257
Harvest21	ABC34429	592	3e-25	60 - 119	100	60 / 60	minus
Harvest21	ABC10257	1044	3e-25	938 - 997	100	60 / 60	plus	ABC10257
Harvest35	U35_18941	1056	3e-25	938 - 997	100	60 / 60	plus

Contig Sequence (1056 bp)

>U35_18941 1056 Hv_44K_v2
GTTCTTCTGAGGCAGGGTTAGATGAAGATCAATCCTCAACTGGTAAGAGCGGGGATTCAT
CATTTTTTGCTGGTTTCTTGAAGAAGGGGTTCAAGGACCTTTCTTTATTTAACCAGTCCA
TGGATAGTGTTAAGGTTTCAATCAATGGCCATCCAATCTCTGAAAGAGCTCTTAAGAAGG
CAGAAAAGAAAGCTGGTCCTGTTGAGCCTGGTTCATATTGGTATGACTGCCGTGCTGGAT
TTTGGGGTATCATGGGTAGAGAATGTATTGGCATTATTCCTCCATATATAAGAGAATTCA
ATTATCCAATGACCAGAAATTGTGCTGGTGGGGACACTGATGTCATTGTCAATGGCAGAG
AACTTCATAAGAGAGATTTAGATTTGCTTGTAGGAAGAGGACTTCCACGCATCTCTGGCA
AATCATATTCCATCGAGATTTCTGGAAATGTTACCGATGAAGCAAATGGAAAGAAGCTAC
GCAGTCTTGGCAAACTTGCTCCGACAATTGAGAAGCTGAAGCGTGGTTTTGGTATGCACG
TCCCTGAAGAGTTTAGGTAGCTGGATATAATGCGGGGTTCCTGCATTTTTAATAATCAGT
TTAATCACCTCCCTCGGAGCTACCTATTGGAGGGCAAGTTTGTGATTTCTACTGAACTTG
ACATGGACGCTTTTTAAGTAGTACTTGGAGTGTTGGTGAGCAGCAGATGTAGCACTCAGG
TTGTGATCACATGATCTTGTGGTTGTACTATTGATGACCTTGGTCCTACTAATTCAGTTT
ATTTGCTGAAAGCTATGTTTGGAAATGATGCAATCTGTCAGGCAGCACTAATTTCTCTGC
AGCCTGTACTTATGAGTGTTATTGTCTTGATGTATTTTCTCATCACGGGAAGCTGTACTT
ATGAGTGTTATTGTCTTGATGTATTTTCTCATCACGGGAAGCCTTAGGTATACGTACAAT
TATCGGCTTGTAATATGTTCCTAGTGCTATACTTCTCTAATATATTTATATATGTAAATA
TATATGTTACTCTTGTATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_18941 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g43330.1	808	1e-111	protein\|extra-large G-protein-related, putative, expressed
Brachypodium v1_2	Bradi2g43830.1	796	3e-115
Arabidopsis v10	AT2G46380.1	768	1e-64	Protein of unknown function (DUF3133) \| chr2:19039377-19042171 FORWARD LENGTH=768