barSeed - Barley Seed Development Database

Probe CUST_9609_PI390587928

Source Contig U35_18942

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9609_PI390587928	Hv_44K_v2	GTCTTCATGTCCTTTTTCTGTTTCCTAGTGGTGAATTGGTGATAAAGATAACAAGAATAG	428	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358181	1823	2e-24	503 - 562	100	60 / 60	plus	ABC12001 ABC44015
MLOC	MLOC_51752.3	1486	2e-24	516 - 575	100	60 / 60	plus	ABC12001 ABC44015
JLOC1	JLOC1_33088.2	1427	8e-25	398 - 457	100	60 / 60	plus
Harvest21	ABC11101	728	3e-25	429 - 488	100	60 / 60	plus
Harvest35	U35_18942	728	3e-25	429 - 488	100	60 / 60	plus

Contig Sequence (728 bp)

>U35_18942 728 Hv_44K_v2
GAGCCCGCTTCTTTGCCCCCTCGTACCACCCAAACTCCAAACCCTAGCTTCCTAGCCTAC
GTGTCCCCGAGCGAGCATGGATCGGATCGTCGGTAGCAAGTACAAGCTGGGCCGCAAGAT
CGGGAGCGGCTCGTTCGGGGAGATATATCTCGCCACGCACGTCGACACTTACGAGATTGT
AGCCGTCAAGATCGAAAACAGCAAAACCAACCATCCCCAATTGTTATACGAGGCCAAACT
GTATAATGCTCTTCAGGGAGGGACTGGTATTGCAAACATAAAATGGTGTGGTATTGATGG
CGAAGAAAATGTTCTTGTTATTGATTTGCTTGGGCCAAGCCTTGAGGATCTGTTTGTTTA
TTGTGGCCGGAGATTCTCACTGAAGACAGTTTTGATGTTGGCAGATCAGATGGTAATAAG
AAGAAACAGTCTTCATGTCCTTTTTCTGTTTCCTAGTGGTGAATTGGTGATAAAGATAAC
AAGAATAGAGTTTTTGCATTCTAAGGGGTACTTGCACAGGGACATCAAGCCAGACAACTT
CCTTATGGGCCTTGGTCGGAAAGCCAACCAGGTCTACATCATTGACTTCGGACTTGCCAA
GCGATACCGTGACTCAACCACGAATCGCCATATACCCTATAGAGAAAATAAAAATTTGAC
TGGCACAGCTCGCTATGCAAGTTGCAACACTCATCTTGGCATTGAGCAAAGCCGAAGGGA
TGATCTGG

Homology of Contig U35_18942 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g17910.1	417	9e-131	protein\|CK1_CaseinKinase_1.4 - CK1 includes the casein kinase 1 kinases, expressed
Brachypodium v1_2	Bradi3g10320.3	417	3e-132
Arabidopsis v10	AT4G28880.1	415	8e-118	\| Symbols: ckl3 \| casein kinase I-like 3 \| chr4:14251351-14254048 FORWARD LENGTH=415