barSeed - Barley Seed Development Database

Probe CUST_9608_PI390587928

Source Contig U35_18943

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9608_PI390587928	Hv_44K_v2	TTCATTGACATTTGAACAACGGCCAGACTACAGTTTTCTTCGACGGCTCTTTAGGGACCT	919	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.460	0.744	1.445	1.759	0.811	1.062
Raw	58.060	144.084	248.447	479.895	77.055	110.795

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358181	1823	2e-24	981 - 1040	100	60 / 60	plus	ABC12001 ABC44015
MLOC	MLOC_51752.4	1024	2e-24	675 - 734	100	60 / 60	plus	ABC12001
MLOC	MLOC_51752.3	1486	2e-24	994 - 1053	100	60 / 60	plus	ABC12001 ABC44015
MLOC	MLOC_51752.2	1662	2e-24	942 - 1001	100	60 / 60	plus	ABC12001 ABC44015
MLOC	MLOC_51752.1	1310	2e-24	942 - 1001	100	60 / 60	plus	ABC12001
JLOC1	JLOC1_33088.2	1427	8e-25	876 - 935	100	60 / 60	plus
JLOC1	JLOC1_33088.1	1476	8e-25	925 - 984	100	60 / 60	plus
Harvest21	ABC11102	1012	3e-25	913 - 972	100	60 / 60	plus
Harvest35	U35_18943	1019	3e-25	920 - 979	100	60 / 60	plus

Contig Sequence (1019 bp)

>U35_18943 1019 Hv_44K_v2
GACGGGAATCGTACATAGATTCATCGTACGCTGATCAATTCCGATGCCCTAACCCAGTCT
GTCCTTCTAGAAGCTCTAGCCCGCTTCTTTGCCCCCTCGTACCACCCAAACTCCAAACCC
TAGCTTCCTAGCCTACGTGTCCCCGAGCGAGCATGGATCGGATCGTCGGTAGCAAGTACA
AGCTGGGCCGCAAGATCGGGAGCGGCTCGTTCGGGGAGATATATCTCGCCACGCACGTCG
ACACTTACGAGATTGTAGCCGTCAAGATCGAAAACAGCAAAACCAACCATCCCCAATTGT
TATACGAGGCCAAACTGTATAATGCTCTTCAGGGAGGGACTGGTATTGCAAACATAAAAT
GGTGTGGTATTGATGGCGAAGAAAATGTTCTTGTTATTGATTTGCTTGGGCCAAGCCTTG
AGGATCTGTTTGTTTATTGTGGCCGGAGATTCTCACTGAAGACAGTTTTGATGTTGGCAG
ATCAGATGATAACAAGAATAGAGTTTTTGCATTCTAAGGGGTACTTGCACAGGGACATCA
AGCCAGACAACTTCCTTATGGGCCTTGGTCGGAAAGCCAACCAGGTCTACATCATTGACT
TCGGACTTGCCAAGCGATACCGTGACTCAACCACGAATCGCCATATACCCTATAGAGAAA
ATAAAAATTTGACTGGCACAGCTCGCTATGCAAGTTGCAACACTCATCTTGGCATTGAGC
AAAGCCGAAGGGATGATCTGGAGTCCATTGGATATGTTCTGTTGTATTTTCTAAGGGGAA
GTCTTCCTTGGCAGGGTTTAAAAGTTGCCACAAAGAAGCAGAAATATGACAAAATAAGTG
AGAAGAAGCTTTCAACACCTATCGAGGTCTTGTGTAAATCCCATCCTGTGGAATTTGCTT
CTTATTTCCACTATTGCCATTCATTGACATTTGAACAACGGCCAGACTACAGTTTTCTTC
GACGGCTCTTTAGGGACCTGTCGGACCGTGAAGGGTACCAATTCGATCATGTCTTTGAC

Homology of Contig U35_18943 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g17910.1	417	0.0	protein\|CK1_CaseinKinase_1.4 - CK1 includes the casein kinase 1 kinases, expressed
Brachypodium v1_2	Bradi3g10320.3	417	0.0
Arabidopsis v10	AT4G28880.1	415	8e-179	\| Symbols: ckl3 \| casein kinase I-like 3 \| chr4:14251351-14254048 FORWARD LENGTH=415