barSeed - Barley Seed Development Database

Probe CUST_9606_PI390587928

Source Contig U35_18945

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9606_PI390587928	Hv_44K_v2	GTTTGCCCACTTTCATACAGAGTTTGCAGTTTCAGTTCCCTACTATTTCCAAACAAAAAA	1392	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.289	1.487	0.971	0.877	0.338	0.322
Raw	1515.187	2635.436	1571.180	2262.671	305.803	308.717

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_35142.2	1794	6e-21	1335 - 1387	100	53 / 53	minus
JLOC1	JLOC1_35142.1	2249	6e-21	1790 - 1842	100	53 / 53	minus
JLOC1	JLOC1_35140.1	3829	6e-21	1487 - 1539	100	53 / 53	plus
Harvest35	U35_18945	1463	3e-25	1393 - 1452	100	60 / 60	plus

Contig Sequence (1463 bp)

>U35_18945 1463 Hv_44K_v2
ATGTGACCGAGTTACAAATCGCCACTCCAAGCATTGCTAAAATTTAAGACGCCTCCCCGT
CCAAGTTCTAACCCCTGTACCACCGTGCCCCTCGCCGCGATCTCCCGCCCGATCCGCATG
GCTGGAATCAAGCTGACGCCCGACGAGCCTGAGCTGCCGCAGGGCACCCCGCCCCGCCCC
CAGCTTCCGTTCCCCGTCGCTGGCTCCGGCGTCACAGCGGGTGGCGGCGGCAGCGGCAGC
GGTGGCCTGGAGATGGCTTCGGACGACGAGCGGTCAGTGGCAGCGGACTCGTGGTCCGTG
CGGAGCGAGTACGGGAGCACGCTCGATGACGACCAGCGCTACGCCGACGCTGCTGATGTG
CTCGCCGCGGCTGCGGCCGCCGGGAACTTCCCCTCCGCTGCCTCTGATTACTGTTCTGAT
AAAGATGACCAAGACCCTAATGAGGAAGGCTCAATGTTGGGTTTACAAAGTTACTGGGAT
GCTTCTTATTCAGAAGATCTCACAAATTTTCAGGAACATGGGCATGCTGGAGAGATATGG
TTTGGTGCAGATGTAATGGATACTGTTGCCATTTGGACAAAAAAATTGTGTGTAAACTTT
ATCCAAGGTGGAATTTCAATGGCTAATGACAACATCAAATGTGAAGTTGATGATAAACAC
TTGATTGACTACCCTGTGCTCGATCTTGGAACTGGCAACGGCCTCCTTCTGCAAGCACTT
GCCAAGCAGGGGTTTTCAGACTTAACAGGAACTGATTACAGTGAAGGAGCCATTGAACTT
GCAAGAAACCTTGCTGCTCGTGATGGGTTCACTACTATAAGTTTCTTGGTCGATGATGTA
CTTCAGACAAAATTAGACAGGAAATTCAAAATTATTACAGATAAAGGGACATTGGATGCC
ATTGGATTGCATCCAGATGGCCGTGCAAAAAGAGTGATGTATTGGGAATCTGTATCAAAC
TTGGTTGAACCAGGTGGCCTTGTGGTCATAACATCATGTAATCACACAAAGGATGAACTT
CTGCAAGAAGTAGAAGAGTTTGGTATGCAGAAATTTGGTAAGGAGGACGCGGAAAGAGGT
GCAAGTGATTCGCACCAGATCTTCCGATACTTGGATCATGTTCAAACGTATCCTACCATC
ATGTTTGGCGGAATTGAGGGGTCTCAAGTGTGCACTGTGGCTTTCCAACGGGCGTGAAAG
GCCAGCTTAAGAGTGTTTTTTATCCCTATGTTGTAGCTCAATTTTATCCTCAGGTTGTTG
TTGTAGCCTACACTGGCAGTCCTTTCCAGTTTGCAAGGACAGAGAGTAAGAGAACTTTAT
GAAGCAATTTTTGGGTAGTGTAAACGAACAAGAGGGACGCAGATGTACCGTATTATTGAT
GTAACTGTGAACGTTTGCCCACTTTCATACAGAGTTTGCAGTTTCAGTTCCCTACTATTT
CCAAACAAAAAAAAAAAAAAAAA

Homology of Contig U35_18945 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g49250.1	424	7e-118	protein\|methyltransferase, putative, expressed
Brachypodium v1_2	Bradi2g46830.1	372	4e-157
Arabidopsis v10	AT1G66680.1	358	6e-128	\| Symbols: AR401 \| S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr1:24866352-24868888 REVERSE LENGTH=358