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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_9596_PI390587928Hv_44K_v2ACCCTTGAGTAGCAATACTGAGGTATCAATAAGTTACATCGAAACTGCAGCAACCACTTT580GeneList: blue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.3111.6321.2870.8620.7500.721
Raw 13.33923.27118.11818.8524.0234.437



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_81864.130782e-241759 - 181810060 / 60plus None
MLOCMLOC_81864.249552e-24669 - 72810060 / 60plus ABC07995
JLOC1JLOC1_54452.225918e-25671 - 73010060 / 60plus
JLOC1JLOC1_54452.125748e-25654 - 71310060 / 60plus
Harvest21ABC335556433e-25581 - 64010060 / 60plus
Harvest35U35_378346433e-25581 - 64010060 / 60plus



Contig Sequence (643 bp)

>U35_37834 643 Hv_44K_v2
GCCTACGCTTCTACGCCCACAGGATCTCGGTTGGATCGAGCTGCGACCACTGCTTCGCCT
CCGGCAACCTGAGGAAGTGCTCGGTTTGTCGAGTAGCTTGGTACTGCGGGAGCGCGTGCC
AGAAAGAAGAATGGAAGCTGCATCAACTTGAGTGTCAAGCCATCTCAGCGCTCACAGAGG
AAAGGAAGAAGATGCTTACTCCTACAATCCGTTTGATGGTGCAACTTATACTAAGAAGAA
AACTGCAAAGCGAAAAGGCCATTGCATCTTCAGCAACAGATAACTACAATCTAGTGGATG
CGTTGGAGTCCCACATCTCGAAGGTTGATGATAATCAGTTGGTCCTCTATGCTCAAATGG
CCAATCTTGTGCAGCTGATTCTCCCTTCAATTGAACTTGATCTTAAGGAAATTGCACATA
CTTTTTCTAAGTTTGCCTGCAATGCTCATACCATATGTGATCCTGAATTGAGGCCCCTTG
GGACTGGACTGTTTCCTGCTATATCAATTATTAACCACAGTTGTGTACCGAATGCAGTTT
TGCTATTTGAGGGTCGGACTGCATATGTGCGCGCATTGCAACCCTTGAGTAGCAATACTG
AGGTATCAATAAGTTACATCGAAACTGCAGCAACCACTTTGAA



Homology of Contig U35_37834 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os03g49730.33745e-130protein|zinc finger protein, putative, expressed
Brachypodium v1_2Bradi1g11010.23514e-130
Arabidopsis v10AT2G17900.14805e-88| Symbols: SDG37 | SET domain group 37 | chr2:7773420-7776675 REVERSE LENGTH=480