barSeed - Barley Seed Development Database

Probe CUST_9593_PI390587928

Source Contig U35_37837

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9593_PI390587928	Hv_44K_v2	GATTAAATGGAACCTCGCTTATGTTCGAACCCAGATAGGTGAAGATACACGGATGCAGAA	140	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13715.2	1422	3e-21	305 - 364	97	58 / 60	plus	ABC12502 ABC47561
JLOC1	JLOC1_9309.1	1738	2e-21	305 - 364	97	58 / 60	plus
Harvest21	ABC33558	655	3e-25	141 - 200	100	60 / 60	plus
Harvest35	U35_37837	655	3e-25	141 - 200	100	60 / 60	plus

Contig Sequence (655 bp)

>U35_37837 655 Hv_44K_v2
GGTACGAATNACGGTCTGACGAAGCTGAGGTCATTCCTCTGTTTCCAGATATTCCAGCAT
TCATATATGATAATCATCGAAGGAGGTCATTTCTTGTCAGTCCTTCATCCAAATATTACA
TTAGCCCATGAATCTTAGAGGATTAAATGGAACCTCGCTTATGTTCGAACCCAGATAGGT
GAAGATACACGGATGCAGAAACCCGCACCGTCCATTTTGTTTCATCTTGCCTCCAAGATT
CATCATCTTGAATGTTGCATTATATTTCATTCCCCTCCCCCAAACACTTGCAGTGCCGTA
AAAGAAAGCTCAAGGTTTCCGTTGTAGCAGTTCCAAAGACCATTGACAATGATATACCTT
TAATGGACAAAACATTTGGTTTTGATACCGCGGTGGAAGAAGCTCAACGGGCCATTAACT
CTGCCTATATAGAGGCACGCAGTGCATACCATGGTATCGGCTTGGTCAAATTAATGGGAA
GAAGCAGTGGTTTCATTGCAATGCATGCTTCTCTTTCAAGTGGGCAGGTTGATGTCTGCT
TAATACCAGAGGTCCCATTCGCGCTAGATGGAGAATATGGTGTTTTACAGCACCTCGAGC
AGTTAATAAAGAACAAAGGATTCTGCGTGGTTTGTGTTGCTGAAGCTGCAGGACA

Homology of Contig U35_37837 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g34050.1	536	2e-71	protein\|phosphofructokinase, putative, expressed
Brachypodium v1_2	Bradi3g37020.1	531	7e-74
Arabidopsis v10	AT2G22480.1	537	2e-58	\| Symbols: PFK5 \| phosphofructokinase 5 \| chr2:9545670-9548414 FORWARD LENGTH=537