barSeed - Barley Seed Development Database

Probe CUST_9583_PI390587928

Source Contig U35_13886

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9583_PI390587928	Hv_44K_v2	TGCTGGTATAGCAGTACGGTCAAGTATAATAGGTGAACTTTGAACTAATCTGCCTATGCT	573	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16599.2	1219	3e-21	1138 - 1198	97	59 / 61	minus	ABC39287
JLOC1	JLOC1_11442.1	1203	2e-21	506 - 566	97	59 / 61	minus
Harvest21	ABC01119	1047	4e-24	1 - 58	100	58 / 58	minus
Harvest35	U35_13886	633	3e-25	574 - 633	100	60 / 60	plus

Contig Sequence (633 bp)

>U35_13886 633 Hv_44K_v2
CAAGACCATCACTCTAGAGGTTGAGAGCTCAGACACCATCGACAACGTCAAGGCCAAGAT
CCAGGACAAGGAGGGCATCCCTCCGGACCAGCAGCGTCTCATCTTTGCTGGCAAGCAGCT
GGAGGATGGCCGTACCCTTGCTGACTACAACATCCAGAAGGAGTCCACCCTTCATCTTGT
CCTGCGTCTACGAGGTGGTATGCAGATCTTTGTGAAGACCCTTACTGGCAAGACCATCAC
TCTGGAGGTTGAGAGCTCAGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGA
GGGCATCCCCCCGGACCAGCAGCGCCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGGCG
CACCCTTGCCGACTACAACATCCAGAAGGAATCCACTCTTCACCTGGTGCTCCGCCTCCG
AGGTGGTCAGTGATTGCCCTGGGTACTCTGGTGGGTGGCCCCTGTTGCTCATGTGAAGTG
TCAGTCTCGTTTGTGTCAAGTTCTACAGTGTCTGGTTTCATGTTTCATGGATCATCGAGT
CCCAGTGAGATGTGTTGGTTTCGTTTAAACAGTTGCTGGTATAGCAGTACGGTCAAGTAT
AATAGGTGAACTTTGAACTAATCTGCCTATGCT

Homology of Contig U35_13886 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g53620.4	230	2e-93	protein\|ubiquitin family protein, putative, expressed
Brachypodium v1_2	Bradi3g52300.1	242	4e-95
Arabidopsis v10	AT4G05050.1	229	7e-94	\| Symbols: UBQ11 \| ubiquitin 11 \| chr4:2588271-2588960 REVERSE LENGTH=229