barSeed - Barley Seed Development Database

Probe CUST_9580_PI390587928

Source Contig U35_13888

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9580_PI390587928	Hv_44K_v2	CAGTGGCGGCCGCATCCTGTGTGTCAGGACCTAAAATGTCCATATTTTCGTATCAAAAAA	1007	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.195	1.802	2.030	0.858	0.467	0.415
Raw	18.686	46.802	43.247	29.559	4.145	4.137

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC01242	1751	6e-22	8 - 64	98	57 / 58	minus	ABC01242
Harvest35	U35_13888	1077	3e-25	1008 - 1067	100	60 / 60	plus

Contig Sequence (1077 bp)

>U35_13888 1077 Hv_44K_v2
GTTCCAGCAGGGCCTGTACATGGGCAACGGCGGCGGCGCCAACGTGGTGGCGTCCGGCTA
CACCAAGGGCTCCGGGCTCGGCGCCGAGATCATCGGCACCTTCGTCCTCGTCTACACCGT
CTTCTCCGCCACCGACGCCAAGAGGAACGCCAGGGACTCCCACGTTCCCATCCTCGCCCC
GCTGCCCATCGGGTTCGCCGTGTTCCTGGTCCACCTGGCCACCATCCCCATCACCGGCAC
CGGCATCAACCCGGCGAGGAGCCTCGGCGCGGCCATCATCTACAACAGGGAGCACGCCTG
GTCAGACCACTGGATCTTCTGGGTCGGCCCCTTCATCGGCGCCGCGCTGGCCGCCATCTA
CCACCAGGTGGTCATCAGAGCGATCCCATTCAAGACCAAGTCCTAAGCTGCTGCTACAAA
GAAAGATGCCATCCCAACCCGAAGAGCAAACTGCGTGTTCTGAGTGAATTTCTTTCTGAT
GGGGGCGGCCCTCTCTTCCCATCGTCCGTGTTACCGTGGAATTCCAATTTGTCTTCCAAG
TTTGATGTGCTACTCTTGCTCTTGCTCTGTATTCACCTGAACCCAGACAGAGGACTTGTA
TGTAATCTCATCAGTGCTCAGTTGTTGTGTAGTACTGCTCGTTGTTGTGCAAATCCAGCA
AAGTTGTTTCAGGTAAAAAAAAAAAAAAAAAAATTTCAGCCCCGGCTGCTATCTTGCTGC
ATTAAAAAAAAAAAAAAAAATTATCGCGCGGTAGAAAGAAACTCGAGGGAAACTGTTGGG
TCGTCCGAGCCGTTGCTCAGCCTCAGCTGCTGCGTGCTACGCTGTGCATGCGGCATATGC
TGCCTGTCAGGCTGTGGCTGAAGCTATGGCTTGGTCACAGGCTAGCTAGAGTGATGGGGC
AAAGGACAATGATGAGCGGAGCCACCAGCCGTTGGCAACTAGTAGCGGCGTGGGGCGTGG
CGTGGCTGCCACTCTGGTCTGGTCCTATTATGCATTGGCCGTGCGCCCAGTGGCGGCCGC
ATCCTGTGTGTCAGGACCTAAAATGTCCATATTTTCGTATCAAAAAAAAAAAAAAAA

Homology of Contig U35_13888 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g44630.2	290	2e-74	protein\|aquaporin protein, putative, expressed
Brachypodium v1_2	Bradi5g18170.1	289	1e-72
Arabidopsis v10	AT4G23400.1	287	4e-72	\| Symbols: PIP1D, PIP1;5 \| plasma membrane intrinsic protein 1;5 \| chr4:12220792-12222155 FORWARD LENGTH=287