- Probe CUST_957_PI390587928
- Source Contig U35_6317
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_957_PI390587928 | Hv_44K_v2 | GGTGACTGTAAAAGTGCAGTTACGCAAGCATGTAAAGAATTTTGTTGGTTTAAGAATTAC | 903 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.354 | 1.276 | 1.234 | 0.973 | 0.341 | 0.372 |
| Raw | 458.894 | 711.167 | 582.558 | 728.757 | 87.302 | 103.832 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK354895 | 2184 | 2e-24 | 2083 - 2142 | 100 | 60 / 60 | plus | ABC14166 ABC39907 |
| MLOC | MLOC_72453.2 | 3667 | 2e-24 | 1898 - 1957 | 100 | 60 / 60 | minus | ABC14166 ABC39907 |
| MLOC | MLOC_72453.3 | 3767 | 2e-24 | 1898 - 1957 | 100 | 60 / 60 | minus | ABC14166 ABC39907 |
| MLOC | MLOC_72453.4 | 4092 | 2e-24 | 1898 - 1957 | 100 | 60 / 60 | minus | ABC14166 ABC39907 |
| MLOC | MLOC_72453.1 | 4304 | 2e-24 | 2525 - 2584 | 100 | 60 / 60 | minus | ABC14166 ABC39907 |
| MLOC | MLOC_72453.6 | 1881 | 2e-24 | 9 - 68 | 100 | 60 / 60 | minus | ABC14166 ABC39907 |
| MLOC | MLOC_72453.7 | 2296 | 2e-24 | 9 - 68 | 100 | 60 / 60 | minus | ABC14166 ABC39907 |
| MLOC | MLOC_72453.5 | 2892 | 2e-24 | 1112 - 1171 | 100 | 60 / 60 | minus | ABC14166 ABC39907 |
| MLOC | MLOC_72452.2 | 3955 | 2e-24 | 1755 - 1814 | 100 | 60 / 60 | minus | ABC14166 ABC39907 |
| MLOC | MLOC_72452.3 | 4796 | 2e-24 | 1739 - 1798 | 100 | 60 / 60 | minus | ABC14166 ABC39907 |
| JLOC1 | JLOC1_48190.3 | 2421 | 8e-25 | 1711 - 1770 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_48190.1 | 2431 | 8e-25 | 1721 - 1780 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC39907 | 487 | 3e-25 | 21 - 80 | 100 | 60 / 60 | minus | ABC39907 |
| Harvest21 | ABC14166 | 963 | 2e-21 | 904 - 961 | 97 | 58 / 60 | plus | ABC14166 |
| Harvest35 | U35_6317 | 1011 | 3e-25 | 904 - 963 | 100 | 60 / 60 | plus |
Contig Sequence (1011 bp)
>U35_6317 1011 Hv_44K_v2 GGTTATGGTAAATATGTTATGCATGTGCACTGTTTGGGGTGAGCCCCTGTCACAAACTGC ACAGTCCTTTATGCCGGAGATGATATACGGAGCTAACCGCAATTTGATGAAGGCAAGGAT GCTGCTCAAGTCACTCGTAATTATTGGAGCTATAGCTGGACTGACTGTAGGAACGGCTGG AACGATTGTTCCATGGCTTTTTCCTAGTATGTTTACCAATGATCAAATGGTTGTACAACA GATGCACAAAGTGCTGATTCCATATTTCACTGCATTGTTCGTGACACCTTCAGTACACAG CCTCGAAGGAGCATTACTGGCTGGAAGGGATCTCACGTATTTGAGTCAATCAATGGGTGC ATGCTTCTGCGTTGGAACCTTTCTTCTACTGCTTGTCCGTGAAAAATTTAGTAGCTTGAC ACTATGCTGGTGGGTACTTGTCTTCTTCCAGTGGAGTCGGTTTGGAAGCGCTCTACAACG GCTTGTTTCTCCAACAGGCATGTTGTATAACGAAAATTTCAACCAGCCTGAGCAAGTCAA AATGAAGGCCACATAGGAGGATGTATTACTGGTTGAAAGAGGACGACAAATACATGCATG TTTTGCAATCCTGTAACCATCATTCTGAAAGGAGTTATGATTAGAGCAGGAGCTGCACAT GTTAACATTGGAAGCAAAGTTCAAGACCTGCTCATTGTCTTTAGGGCTAGGAAAGTCCAT TTGGCTCTAGGGTGGAAATCAGTCTCCTAGAGCCAAATTTTCAGGTGTTTTTTATGTTTA GTTTTCGTAATTGTAGGGCTCAAAAAGGGTTGCCAAGTTTTCAGGTGTTTTTGATGTTTA GTTTTCGTAATTGTGTCTTTCTATCCTAGGGACCTTCATCCCACGCTTTACTGCTGCAGA AAAGGTGACTGTAAAAGTGCAGTTACGCAAGCATGTAAAGAATTTTGTTGGTTTAAGAAT TACAAAATGGTCAAAAATGTCCATGTTTTTTGTTAAAAAAAAAAAAAAAAA
Homology of Contig U35_6317 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os02g02980.1 | 533 | 2e-99 | protein|MATE domain containing protein, expressed |
| Brachypodium v1_2 | Bradi3g02170.2 | 547 | 1e-111 | |
| Arabidopsis v10 | AT2G21340.1 | 559 | 4e-65 | MATE efflux family protein | chr2:9132629-9136236 FORWARD LENGTH=559 |