barSeed - Barley Seed Development Database

Probe CUST_9572_PI390587928

Source Contig U35_25864

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9572_PI390587928	Hv_44K_v2	AGCTAGTACACAAGTTTAAAGGTTTCCGAAACACCAACAGCCAAATCTCAGCCTGCTACG	504	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364639	2893	2e-24	1950 - 2009	100	60 / 60	plus	ABC43226
MLOC	MLOC_60609.1	2354	2e-24	1332 - 1391	100	60 / 60	plus	ABC43226
JLOC1	JLOC1_39539.1	2523	8e-25	1467 - 1526	100	60 / 60	plus
Harvest21	ABC21340	597	3e-25	505 - 564	100	60 / 60	plus
Harvest35	U35_25864	599	3e-25	505 - 564	100	60 / 60	plus

Contig Sequence (599 bp)

>U35_25864 599 Hv_44K_v2
AGGATGTTCTTGATCTCTGCTGGTCCAAGTCACAGCATTTACTTTCATCTTCAATGGATA
AAACAGTAAGGTTATGGCACATGTCAAGCGTATCATGTTTGAAAACGTTCTCACACTGCG
ATTATGTTACATGCATCCAGTTCAACCCTGTCGATGATAGATACTTCATCAGTGGTTCCC
TGGATGAAAAGGTTCGCATATGGAGCATTCCAAAACGTGAAATTGTTGATTGGCATGATC
TGCATGAAATGGTCACTGCTGCTTGCTATACCCCTGATGGACAGAGTGCCTTAGTTGGTT
CCCACAAGGGCAGCTGCCATATTTATGACACATCAGATAACAAGCTTATCCAAAAGAAAC
AAATTGACCTGCAAACTAAAAAGAAGAAGTCCCGGCAGAAGAAGATCACTGGATTTCAGT
TACTTGAATAGTTCCTCCCAGGGAGTTCTTCCAAGGTGCTCATCACATCTGCTGATTCAC
GGATCCGAGTTGTTGATGGTTTTGAGCTAGTACACAAGTTTAAAGGTTTCCGAAACACCA
ACAGCCAAATCTCAGCCTGCTACGCAGCTAGAGGCAGATACGTGATCTCAGCGAGCGAA

Homology of Contig U35_25864 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g42590.1	773	8e-94	protein\|WD-40 repeat family protein, putative, expressed
Brachypodium v1_2	Bradi3g49817.1	797	4e-101
Arabidopsis v10	AT3G15470.1	883	2e-88	Transducin/WD40 repeat-like superfamily protein \| chr3:5216630-5219868 REVERSE LENGTH=883