barSeed - Barley Seed Development Database

Probe CUST_9571_PI390587928

Source Contig U35_25865

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9571_PI390587928	Hv_44K_v2	TTTAAAATCAGTCAGTGCCGTTGTTTCAGGCACTAAGAAATTGATATCTTTACCCATCGA	431	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4728.1	1523	2e-24	709 - 768	100	60 / 60	minus	ABC13047
JLOC1	JLOC1_2979.2	5733	8e-25	5119 - 5178	100	60 / 60	plus
JLOC1	JLOC1_2979.1	5705	8e-25	5091 - 5150	100	60 / 60	plus
Harvest21	ABC37561	618	3e-25	390 - 449	100	60 / 60	plus
Harvest35	U35_25865	660	3e-25	432 - 491	100	60 / 60	plus

Contig Sequence (660 bp)

>U35_25865 660 Hv_44K_v2
ATTTTGCCTCTTCAATTACATCTTGATCAAGGGCAGCTTAAGTTCCTCATGTGTTTTTTC
CAGAATGACTCTTGTAACAACAGCTCTCATTTTCCTTGCGAAAATGATATTGTTCATATA
GAGAGCACAACCTATGGAAACAATACAGTTCTGGATGAGGCATTACTTCCGTTCTTTCAG
AAATTTGATGTCAAGCCTATTGTTCTGCACATCAATTATATCCCTCGTCAGTTCGATCCT
GTTGCACTAGGCAAGGGAAATTATGCAGAACTTCTCAACATCCTTCCGTTGAAGGGAATC
GATTTGAAGCTTAAACATGTTTCTGCAATGGGGGTGTATGGGTGGAATAGTATTTGTGAA
ACAGTTGGTGCAGAGTGGTTGGAGGACATATCTAAAAATCAGGTCCATAAATTGTTAAAA
GGGCTTCCTCCTTTAAAATCAGTCAGTGCCGTTGTTTCAGGCACTAAGAAATTGATATCT
TTACCCATCGAAAGTTACAAGAAAGACCGGAAGTTGGTCAAGGGAATGCAAAGAGGTGCT
GTCGCCTTTATCAGAAGTGTTTCCATTGAAGCTGTAGGGCTTGGTGTCCATTTGGCAGCG
GGAGCTCATGATATGCTGCTGAAGGCAGAACATGCCCTTACAGCTCTACCACCACCTTTA

Homology of Contig U35_25865 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g15700.1	1920	1e-102	protein\|expressed protein
Brachypodium v1_2	Bradi1g43830.2	1949	2e-107
Arabidopsis v10	AT3G19190.1	1839	4e-56	\| Symbols: ATATG2, ATG2 \| autophagy 2 \| chr3:6639879-6648274 FORWARD LENGTH=1839