barSeed - Barley Seed Development Database

Probe CUST_9567_PI390587928

Source Contig U35_37841

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9567_PI390587928	Hv_44K_v2	AAAGGAAACCTCGCTGTTTATATGCGAATCTGTCTGCGTATAAAGTTCTTTAACTTGTTT	332	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60368.2	1446	2e-24	341 - 400	100	60 / 60	minus	ABC10837
MLOC	MLOC_60368.1	3032	2e-24	440 - 499	100	60 / 60	minus	ABC10837
Harvest35	U35_37841	633	3e-25	333 - 392	100	60 / 60	minus

Contig Sequence (633 bp)

>U35_37841 633 Hv_44K_v2
TTTTTTTTTTTTTTTTTCCACCAGAATGCAACGTCATACTCTTATTATTGCTGATGAGAT
GATAGTCAGTACAGGAGAAGACAACAAGCGCGCGCATTCTTTGATCTGAATTGCCTTATA
TACATACACTGGGTTTGCTCGGCCAACTGAAGCTGCACTGTCTATTCTGGTCCACTTCAG
CTGTCCGACTCATCAGAGTCGCTCCTATCAGCGTCAGCTTCTTCGCGATTTGCAGCAGGC
TCTTGAACGTCAGTCTTGGGTACAGGAGCTGGTGCAGCTTTCTTGCGATCACCGCCTTCA
CCACGTCCAGTTGCACTAGCATTCTGGTCTACAAACAAGTTAAAGAACTTTATACGCAGA
CAGATTCGCATATAAACAGCGAGGTTTCCTTTTATGATGGTTTGACCCATAACCGCGATG
CAGTCCTGATACAGAACACCTTTAAACAAGGCATTCCAAGTTTTGAAGGTTAGGTTTGGA
AACCACTATATGTGATCACTATAACGACATGCTTAAGAGATTATCAACGTTATCCTTATC
AACAAGGGAACTACATATAGATATCATGTCTTCTAACGTAAAGGGCAAGCAGTTTACTCA
TTAGGAAGTTGATGAGCCAATGGAAAGTGCAAG

Homology of Contig U35_37841 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None