- Probe CUST_9565_PI390587928
- Source Contig U35_37843
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_9565_PI390587928 | Hv_44K_v2 | TCTATGATCCGCAGGCTGGTGAAGTTTTGATTGACGGGATCAATATCAAGAGTTTACAGC | 599 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK363190 | 4721 | 2e-24 | 1166 - 1225 | 100 | 60 / 60 | plus | ABC20774 ABC25561 |
| MLOC | MLOC_68245.4 | 1437 | 2e-24 | 622 - 681 | 100 | 60 / 60 | plus | ABC25561 |
| MLOC | MLOC_68245.8 | 2000 | 2e-24 | 1231 - 1290 | 100 | 60 / 60 | plus | ABC25561 |
| MLOC | MLOC_68245.2 | 3144 | 2e-24 | 2788 - 2847 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_68245.9 | 1318 | 2e-24 | 594 - 653 | 100 | 60 / 60 | plus | ABC25561 |
| MLOC | MLOC_68245.5 | 1773 | 2e-24 | 1148 - 1207 | 100 | 60 / 60 | plus | ABC25561 |
| MLOC | MLOC_68245.1 | 2111 | 2e-24 | 1396 - 1455 | 100 | 60 / 60 | plus | ABC25561 |
| MLOC | MLOC_68245.10 | 1111 | 2e-24 | 338 - 397 | 100 | 60 / 60 | plus | ABC25561 |
| MLOC | MLOC_68245.7 | 1967 | 2e-24 | 1095 - 1154 | 100 | 60 / 60 | plus | ABC25561 |
| MLOC | MLOC_68245.6 | 2209 | 2e-24 | 1422 - 1481 | 100 | 60 / 60 | plus | ABC25561 |
| JLOC1 | JLOC1_45131.3 | 1893 | 8e-25 | 143 - 202 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_45130.1 | 1895 | 8e-25 | 1259 - 1318 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC33563 | 659 | 3e-25 | 600 - 659 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_37843 | 659 | 3e-25 | 600 - 659 | 100 | 60 / 60 | plus |
Contig Sequence (659 bp)
>U35_37843 659 Hv_44K_v2 GGAATTGGCACGAGNGAATAAACTATAAACAAAGCATACAAGACAACTGTCAAGGAAGGA CTTGCCAATGGTTTTGGCATGGGTTCTGTTTTCTTCATATTCTTCTCTAGCTATGGTTTA GCCATATGGTATGGTGGAAAGTTGATACTTACTAAAGGATACACAGGAGGAGAAGTCATC AGTATCTTGTTTGCTATCATGACTGGGGCAATGTGAGTTATTCACCTTCAAGTGGAATTC ATATCGTAATGATGCTTCACATCGCATCGCTGGTAGTGATAATTTTGAATTGTGTTGCAG GTCTTTAGGTAATGCAACCCCTTGTATGACAGCCTTTGCAGAAGGACAATCTGCAGCACA CAGATTGTTCGCAACAATCAAGAGGAAACCAGAGATTGATCCTGATGACAAGACTGGTAA GCAGTTAGAAGATATCAAGGGTGATGTTGAGCTGAGAGATGTGTATTTCAGCTACCCAGC AAGGCCTGAGCAACTGATATTTGATGGATTCTCCTTGCATGTTTCTAGTGGCACTACAAT GGCCATAGTTGGGGAGAGTGGAAGTGGCAAGTCAACTGTGATTAGTCTTGTAGAGAGATT CTATGATCCGCAGGCTGGTGAAGTTTTGATTGACGGGATCAATATCAAGAGTTTACAGC
Homology of Contig U35_37843 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g50160.1 | 1275 | 2e-86 | protein|MDR-like ABC transporter, putative, expressed |
| Brachypodium v1_2 | Bradi2g47400.1 | 1263 | 9e-87 | |
| Arabidopsis v10 | AT1G02520.1 | 1278 | 2e-63 | | Symbols: PGP11 | P-glycoprotein 11 | chr1:524134-528745 FORWARD LENGTH=1278 |