- Probe CUST_9564_PI390587928
- Source Contig U35_37844
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_9564_PI390587928 | Hv_44K_v2 | GCCCTACTCGACTTTACTCGACTATTTAGAAAAAGCTACTACTTGAATGCATACTTTTAC | 162 | GeneList: yellow MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 2.070 | 1.633 | 1.020 | 0.579 | 0.670 | 0.276 |
Raw | 70.986 | 76.375 | 47.323 | 35.841 | 18.645 | 7.582 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
Harvest21 | ABC33564 | 247 | 3e-25 | 163 - 222 | 100 | 60 / 60 | plus | ABC33564 |
Harvest35 | U35_37844 | 247 | 3e-25 | 163 - 222 | 100 | 60 / 60 | plus |
Contig Sequence (247 bp)
>U35_37844 247 Hv_44K_v2 CAGGTGTACAGCTACCTATCCCTACGAAAAAGCAAGCCTACTTACTACGTGTTTTCCTCT ATTGGCAAATACGCATATACTGACCTACTCACGTGCATATCTTGCATAAAGCCTTCCCCT AAAAAAACAAACTAGCCCGTATCTTCCTAGTCCTTGTTGCCAGCCCTACTCGACTTTACT CGACTATTTAGAAAAAGCTACTACTTGAATGCATACTTTTACTATTATTTAAAAAAAAAA AAAAAAA
Homology of Contig U35_37844 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |