- Probe CUST_9555_PI390587928
- Source Contig U35_49822
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_9555_PI390587928 | Hv_44K_v2 | TTTTAGGGGTGGTGCTGGTCCTAATTATGCCTTATAGAGAGCTGCTTAACGATTGACAGG | 11 | GeneList: lightgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.478 | 0.440 | 0.683 | 1.801 | 4.489 | 20.289 |
| Raw | 10.429 | 12.653 | 20.628 | 74.874 | 72.876 | 371.785 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC51750 | 377 | 3e-25 | 12 - 71 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_49822 | 377 | 3e-25 | 12 - 71 | 100 | 60 / 60 | plus |
Contig Sequence (377 bp)
>U35_49822 377 Hv_44K_v2 AGAGAACTAGCTTTTAGGGGTGGTGCTGGTCCTAATTATGCCTTATAGAGAGCTGCTTAA CGATTGACAGGGCGGCGGTTGACGACGTCGACAAGGGGTCCGACCATGGTGGCGGGGACG CGCATGGTGCCGATGGCCATGGCCCCGGCGGGGGCGGGGTTCAGCGGGGTGGTGCTGAAC AAGACGCCCCACCTCTCATTGCCTCACCCCAGCGACGGCGAATGGAGATGCCGACGCACT CTGCCGCGTCTGTGCCGTTTCATAGCCCGAGGAAGGTGGTCAAGAAGGTGTTGGCCTTGT CCCACCCCGAGGGGCAGGGCGCCACAGTCCGCCAGAGCATCGGCGGGCATGAGCTCCGGA ACCTGGATCCGTTCCTG
Homology of Contig U35_49822 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |