barSeed - Barley Seed Development Database

Probe CUST_9549_PI390587928

Source Contig U35_13897

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9549_PI390587928	Hv_44K_v2	GTGGAGACTCCTTCTGCTTTGTTGCAAACAGAACAAGAAAGTATTAATTTGAGCTTCAGC	1073	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	8.524	5.936	1.330	0.642	0.333	0.253
Raw	228.239	269.852	48.718	42.104	5.601	4.903

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_30357.2	797	8e-25	626 - 685	100	60 / 60	plus
JLOC1	JLOC1_30357.1	844	8e-25	673 - 732	100	60 / 60	plus
Harvest21	ABC01014	1162	3e-25	30 - 89	100	60 / 60	minus
Harvest21	ABC01015	1878	5e-23	1791 - 1849	98	59 / 60	plus
Harvest21	ABC01016	1083	2e-21	1026 - 1083	97	58 / 60	plus
Harvest35	U35_13900	1819	3e-25	1738 - 1797	100	60 / 60	plus
Harvest35	U35_13897	1162	3e-25	1074 - 1133	100	60 / 60	plus

Contig Sequence (1162 bp)

>U35_13897 1162 Hv_44K_v2
ATCAAGATCCCACTCATCTTGGGTATCTGGGGAGGCAAGGGTCAAGGAAAATCATTCCAG
TGTGAGCTTGTGTTCGCCAAGATGGGCATCAACCCCATCAGGCAGCGGTACCGTGAGGCT
GCAGACATGATCAAGAAGGGTAAGATGTGCTGCCTCTTCATCAACGATCTTGACGCTGGT
GCGGGTAGGATGGGCGGAACCACGCAGTACACCGTCAACAACCAGATGGTGAACGCCACC
CTGATGAACATCGCCGATGCCCCCACCAACGTGCAGCTCCCTGGCATGTACAACAAGGAG
GAGAACCCCCGTGTGCCCATCGTCGTCACCGGTAACGATTTCTCGACGCTCTACGCTCCT
CTGATCCGTGATGGTCGTATGGAGAAGTTCTACTGGGCTCCCACCCGTGACGACCGTATC
GGTGTCTGCAAGGGTATCTTCCAGACCGACAATGTCAGTGACGAGTCTGTCGTCAAGATC
GTCGACACCTTCCCAGGACAATCCATTGACTTTTTCGGTGCTCTGCGTGCTCGGGTGTAC
GACGATGAGGTGCGCAAGTGGGTCGGCTCTACCGGAATCGAGAACATTGGCAAGAGGCTG
GTGAACTCGCGGGACGGGCCCGTGACCTTCGAGCAGCCAAAGATGACAGTCGAGAAGCTG
CTAGAGTACGGGCACATGCTCGTCCAGGAGCAGGACAATGTCAAGCGTGTGCAGCTTGCT
GACACCTACATGAGCCAGGCAGCTCTGGGTGATGCTAACCAGGATGCGATGAAGACTGGT
TCCTTCTACGGTAAAGGAGCACAGCAAGGTACTTTGCCCGTGCCGGAAGGTTGCACCGAC
CAAAATGCCAAGAACTACGACCCAACGGCAAGGAGCGACGACGGCAGCTGCCTTTACACC
TTTTAAGCATGCCACTTTTAATATCTGATGTTTTACCTACCTAAGTCCGCATCGCATCCA
AGCGATTGCTGGGCATGTTTTGTTAATATATCTCTAAATATATTGAGTATACCCATTTGG
CAAAGACCAATACACCTACTTATCATTTGTCACTCTCAGTATTCATTCCTTCAGTGGAGA
CTCCTTCTGCTTTGTTGCAAACAGAACAAGAAAGTATTAATTTGAGCTTCAGCTTATTAA
TTATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_13897 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g47970.1	467	3e-170	protein\|AAA-type ATPase family protein, putative, expressed
Brachypodium v1_2	Bradi4g09125.2	466	0.0
Arabidopsis v10	AT2G39730.1	474	0.0	\| Symbols: RCA \| rubisco activase \| chr2:16570951-16573345 REVERSE LENGTH=474