- Probe CUST_9539_PI390587928
- Source Contig U35_25873
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_9539_PI390587928 | Hv_44K_v2 | CAGATCAATCAAACACTCGATAGAACATGAATGAAACCCACTATTCCTACTGCTAAAAAA | 336 | GeneList: darkslateblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.619 | 2.286 | 1.168 | 0.871 | 0.348 | 0.341 |
| Raw | 355.249 | 771.328 | 349.626 | 418.831 | 55.794 | 61.805 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest35 | U35_25873 | 407 | 3e-25 | 337 - 396 | 100 | 60 / 60 | plus |
Contig Sequence (407 bp)
>U35_25873 407 Hv_44K_v2 GACCCCCGCTGCCCGCGCTGCGAGTCGCACGTGCCGCCGCCCCCGGCCCCGGCGCCCAAG AAGAAGCCCAGGATCGACCTCAACGTCGGCTTCCTCGGCACCTAGCCGGCGTAGCCAAGC CAAGCCAAGAAGTAGGTCAAGATGGCTGTCGTCCGTCGTCGTCCTCGGCGCGTTAGGTGG GCTGTAGGCCTCCGGTGCCCGGACTCGCCGCGACGGGCGCCATTGTTTTTTTGATGCCAC CGATAGATTCCGGTACATATGGAGGTGTGGAGGTGCTCCGATTCTGATTTTTTGCTTGTC CATTTCCAAGTATGTCCGTCCCAGATCCTGTCATGTCAGATCAATCAAACACTCGATAGA ACATGAATGAAACCCACTATTCCTACTGCTAAAAAAAAAAAAAAAAA
Homology of Contig U35_25873 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |