- Probe CUST_9538_PI390587928
- Source Contig U35_25874
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_9538_PI390587928 | Hv_44K_v2 | TGATGATAATTCATACAGTAGAATAGACGAGAAATGGGGCAGTGTCGCTTGGTTAAAAAA | 371 | GeneList: darkolivegreen MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.297 | 0.645 | 0.871 | 1.543 | 1.608 | 1.702 |
Raw | 3.031 | 16.544 | 19.916 | 55.109 | 19.937 | 24.408 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
JLOC1 | JLOC1_47847.1 | 1783 | 5e-22 | 1592 - 1646 | 100 | 55 / 55 | plus | |
Harvest21 | ABC21613 | 441 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus | ABC21613 |
Harvest35 | U35_25874 | 442 | 3e-25 | 372 - 431 | 100 | 60 / 60 | plus |
Contig Sequence (442 bp)
>U35_25874 442 Hv_44K_v2 GAGCAGGTGCGGCGGCTGCAGGAGCTGGAGGACGAGCGGGCCAAGGGGTACTCGCCGTCG TTGCGCCACGCCGGGCACCGGCACGAGCTGAGCGTCGTGTCGGAGAAGTCGGGCGGAGGG CCGTACGTGTGCTGCGAGTGCGACGAGCAGGGGTTCGGCTGGGCGTACCAGTGCATCGCC TGCGGCTACGAGATACACCTCCGGTGCGGCCGAGACGGGGAAGACGGCGGCGCCGTGGGA GCTGAGCAGTAGACGATTACGGGACTCTATTATTACTGGAGTATATTATGTATATAGATT AAAATGAACGGATGTTGTGTGTGCGTGCTCTGGAAAAGAAGGTCATGTTGCTATTGTGTA GGTGGCAAGTCTGATGATAATTCATACAGTAGAATAGACGAGAAATGGGGCAGTGTCGCT TGGTTAAAAAAAAAAAAAAAAA
Homology of Contig U35_25874 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |