barSeed - Barley Seed Development Database

Probe CUST_9534_PI390587928

Source Contig U35_25878

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9534_PI390587928	Hv_44K_v2	TATCCGTTGGTCTTGTGAAGTACTCCCTCCCTTTCGAAATAAGTGTCGTAAATTTAGTAC	830	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358265	2084	2e-24	1222 - 1281	100	60 / 60	plus	ABC08776 ABC08778 ABC35438 ABC37763
JLOC1	JLOC1_38362.1	1600	2e-21	1226 - 1285	97	58 / 60	plus
Harvest21	ABC21527	890	3e-25	831 - 890	100	60 / 60	plus
Harvest35	U35_25878	890	3e-25	831 - 890	100	60 / 60	plus

Contig Sequence (890 bp)

>U35_25878 890 Hv_44K_v2
GACCACCTCCGCTGGGGTCTGCACCCTCGACATGGTCCGCTACGCCCTAGAGTGCGCTGC
CGCCGCGCGGTCAGCCCGCTCGCCGGACACGTCCTCCTCTTCGTTGGCGTCCACCTCATC
CTCGTCCTCCTCCCTGGGAAAGCGCAGCCGGTCGCCGCCTTCAAGCACGGCATCGCCCGC
CGCGAACCCGGCCATGCGCGCGTGCGCGTGCCCGTCCTGCTTCACGTACGTGCTCATCGC
CGAGGCCGACCCCTGGTGCCCGCGGTGCGCATCGAAGGTGCCGCCGCTCCCCAGTAAGCC
CGCCGCCCACAGCAGCGGGAAGAAGCCGAAGATTGACCTGAATGCAGACGCCGATGAGAC
AGAGTGAACGGGAAAAGTAGAAAGATGAATGATCTTTTTCTTTTTGGAAAAGTTTTGAAG
TCATCAATTGGTTGGGAAGCGGGAGGAGCCCCGCCGGCTGACGGCGCTAAAATGTTCTTC
ACCACCGCCGTGGCGGAGATCCACATCGGCTGGGCAACGAGTTCCTCGTCCTTGTGTACT
CCGGTGAATCGTATGCTGCATCAGTCCTTGTCTCCTTGTGTACTCCGGTGAATCGTATGC
TGCATCAGCACCTCCATCGGGTCCGCCCATAGCAGCGGAGGCAAGTGCCTGTTGTTGACT
TTGCACACACCTAGGAATCTCAGTCGACACTTTTTTGCTCGCGGAGGCCATGAAAGCGAT
GTAGGAGTATATAACAGAAATCATTTTATGTTTGCAATTTGGTATACAAATCCCGTTGAT
CACTGATTACACACACAGGGAGCATTTGTTTGCCACACATAGATATGCCATATCCGTTGG
TCTTGTGAAGTACTCCCTCCCTTTCGAAATAAGTGTCGTAAATTTAGTAC

Homology of Contig U35_25878 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None