barSeed - Barley Seed Development Database

Probe CUST_9531_PI390587928

Source Contig U35_37851

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9531_PI390587928	Hv_44K_v2	ATGATGCCTCTCTTCTGTGTGGAGAATGAGATGAGATGAGTCGAGGTTGCGAGATTATGA	461	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60457.1	1985	2e-24	1622 - 1681	100	60 / 60	plus	ABC18500
JLOC1	JLOC1_39423.1	1917	8e-25	1589 - 1648	100	60 / 60	plus
Harvest21	ABC33576	616	3e-25	462 - 521	100	60 / 60	plus
Harvest21	ABC18500	621	3e-25	287 - 346	100	60 / 60	minus	ABC18500
Harvest21	ABC35536	656	1e-23	528 - 588	98	60 / 61	plus
Harvest35	U35_37852	777	3e-25	266 - 325	100	60 / 60	minus
Harvest35	U35_37851	616	3e-25	462 - 521	100	60 / 60	plus
Harvest35	U35_6805	867	3e-25	528 - 587	100	60 / 60	plus

Contig Sequence (616 bp)

>U35_37851 616 Hv_44K_v2
GATATTTTACGTTCACCACCTGACTGCAAAGGTAGCATGAAGGATTTCCCAATTCTGTAT
GGTAACCTTCGATTTGTTAGTCCGTTGCTTTTCTCTGTGCCTTGTAAAAATAAATACCTT
CTAGAAGAAATGAGAACACATGACCTGATGGATATTCTTCTGAAAATCGGGGTGCGAAAG
TTGTCTGGACATGAAATTATCAAAAATCACATCCTAGCGTCTTTGCCAAATGGTAAAGAT
GCTAAGAAGGCTGATAAGATGATGATGATAGAGTATGTGAGTTTTATCATGCTTCATCTT
CAGTCTCCATGTACAAGCTGTAATTTCGGGAAGGAAGAGATAATGTTAGAACTACGTAGT
AGACCTATCTTACTTGTCGGCGGTAATCACTGAGATCTCCATCTCCGCTGAACCCTTAAT
AGGAGAGACAAGCTGAGTTGGCTGCTCCGACCTGTCAGTCCATGATGCCTCTCTTCTGTG
TGGAGAATGAGATGAGATGAGTCGAGGTTGCGAGATTATGAGGCAGCTCCAGATCCCTGT
GTGCATGTAGTGATGTCTCTGCTTTCTGAGGCAATGATCTTGGTGATGGGTCTCTGGATC
CGTGTTACACATGACA

Homology of Contig U35_37851 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None