barSeed - Barley Seed Development Database

Probe CUST_9530_PI390587928

Source Contig U35_37852

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9530_PI390587928	Hv_44K_v2	CAATTCTGTATGTAACCTTCGATTGTTAGTCCGTTGCTTTTCTCTGTGCCTTGTAAAAAT	-1	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.751	1.138	1.350	0.711	0.573	0.493
Raw	129.560	116.956	136.040	101.352	31.283	30.149

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37586.2	6526	9e-22	4751 - 4812	97	60 / 62	plus	None
MLOC	MLOC_37586.1	6673	9e-22	4802 - 4863	97	60 / 62	plus	None
JLOC1	JLOC1_24345.2	6549	5e-22	4780 - 4841	97	60 / 62	plus
JLOC1	JLOC1_24345.1	6561	5e-22	4782 - 4843	97	60 / 62	plus
Harvest21	ABC33576	616	2e-22	50 - 111	97	60 / 62	plus
Harvest35	U35_37852	777	1e-23	676 - 736	98	60 / 61	minus
Harvest35	U35_37851	616	2e-22	50 - 111	97	60 / 62	plus

Contig Sequence (777 bp)

>U35_37852 777 Hv_44K_v2
TTTTTTTTTTTTTTTTTACTATTGCAATGGTGTTCAATTCTTGACTATTGTTATGATCAA
ATACAGTTTCGTTGTAACCAATCAAACAAACCAACAGTTATGGTTATGTAGCCACTATTA
CAACCGTTTACAAGTCAGTGGAGCAGAGGCTCCAGGCACAGAGACGACGATGTCATGTGT
AACACGGATCCAGAGACCCATCACCAAGATCATTGCCTCAGAAAGCAGAGACATCACTAC
ATGCACACAGGGATCTGGAGCTGCCTCATAATCTCGCAACCTCGACTCATCTCATCTCAT
TCTCCACACAGAAGAGAGGCATCATGGACTGACAGGTCGGAGCAGCCAACTCAGCTTGTC
TCTCCTATTAAGGGTTCAGCGGAGATGGAGATCTCAGTGATTACCGCCGACAAGTAAGAT
AGGTCTACTACGTAGTTCTAACATTATCTCTTCCTTCCCGAAATTACAGCTTGTACATGG
AGACTGAAGATGAAGCATGATAAAACTCACATACTCTATCATCATCATCTTATCAGCCTT
CTTAGCATCTTTACCATTTGGCAAAGACGCTAGGATGTGATTTTTGATAATTTCATGTCC
AGACAACTTTCGCACCCCGATTTTCAGAAGAATATCCATCAGGTCATGTGTTCTCATTTC
TTCTAGAAGGTATTTATTTTTACAAGGCACAGAGAAAAGCAACGGACTAANCAATCGAAG
GTTACATACAGAATTGGGAAATCCTTCATGCTACCTTTGCAGTCAGGTGTGGAACTG

Homology of Contig U35_37852 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None