barSeed - Barley Seed Development Database

Probe CUST_952_PI390587928

Source Contig U35_6322

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_952_PI390587928	Hv_44K_v2	CCGGCATCTTGATCTTGAGCATGATTGTAGGCAAATTTTCAAAGATATGTTACGGACCTA	738	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.386	2.312	1.092	0.740	0.253	0.387
Raw	1407.367	2074.244	887.103	952.077	113.768	187.550

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354857	3587	3e-22	3499 - 3554	100	56 / 56	plus	ABC14698
MLOC	MLOC_3791.2	1494	3e-22	1331 - 1386	100	56 / 56	plus	ABC14698
JLOC1	JLOC1_2282.1	1438	1e-22	1333 - 1388	100	56 / 56	plus
Harvest21	ABC14698	795	8e-21	3 - 57	98	55 / 56	minus	ABC14698
Harvest35	U35_6322	814	3e-25	739 - 798	100	60 / 60	plus

Contig Sequence (814 bp)

>U35_6322 814 Hv_44K_v2
GAGACGATANGAGAAACTAAATACCGCTTAGATCCTAAGTATGCAAATGTGAAGACACCG
GACCGACATGTCCGCACAAGGCTTTATTTCACATCGGAATCCCATATACACTCATTGATG
AATGTCCTTCGGTATTGCAACTTGGATGAGTCTCTACATGGAGAGGATAGCCTTGTCTGC
CAAAGTACTCTGGACCGACTACATAGAACCAGGGAGCTTGATTATATGAGCAATATCGTG
CTTAGAATGTTCGAAAATACAGAGGTTCCTTTAGAAGATGAGGAAAGGTTCCGGATCGAA
ATGACATTCAGTCGTGGTGCTGATCTCAGCCCTCTCGAGGACAAAACCAGTGAAACTTCT
CCGTTGCTCCAGGAGCACACCCTGCCGATAATGGGCCCCGAGAGACTGCAGGAAGTTGGC
TCTTGCCTGACACTGGACAAGTTTGAGAAGATGGTGCGGCCGTTTGCCATGCCTCCTGAG
GACTTTCCTCCGGCTGCACCTCCACAAGTCTTGGGATACTTCTCCAAGGGCGCTGGGGTG
CTTGAACGGCTGGCTAGTTTCTGGCCTTTCCACAAGAGCGGAATTAACAGCAAAATGGCT
GAAAAAGCTGTGAATTGCCAGAAATGAGTTCATGTGAATATTCATTCCTCTTTGTTAACA
TCTGGTGGCGACACCATTTGCGCAATTTTGGTAACATGGGTTCATCTTTCAGAAACTGAA
TCTCACGTGTACTTTTGCCCGGCATCTTGATCTTGAGCATGATTGTAGGCAAATTTTCAA
AGATATGTTACGGACCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_6322 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g48300.1	1045	2e-100	protein\|histidine acid phosphatase, putative, expressed
Brachypodium v1_2	Bradi1g12140.1	1045	5e-110
Arabidopsis v10	AT5G15070.2	1059	2e-82	Phosphoglycerate mutase-like family protein \| chr5:4876898-4885615 FORWARD LENGTH=1059