barSeed - Barley Seed Development Database

Probe CUST_9527_PI390587928

Source Contig U35_37856

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9527_PI390587928	Hv_44K_v2	TTGTTGTTGCGTGTGGTCTTTGTCCTGAAAGAGTCAAACTTTGGTTGTTACAGTGTTAAA	14	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.913	1.693	1.099	0.867	0.397	0.403
Raw	2200.123	2999.303	1759.713	2169.001	356.601	386.078

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60167.4	767	2e-23	547 - 604	100	58 / 58	plus	None
MLOC	MLOC_60167.1	2037	2e-23	1902 - 1959	100	58 / 58	plus	None
MLOC	MLOC_60167.2	2040	2e-23	1905 - 1962	100	58 / 58	plus	None
JLOC1	JLOC1_39213.2	1745	1e-23	1610 - 1667	100	58 / 58	plus
JLOC1	JLOC1_39213.1	1742	1e-23	1607 - 1664	100	58 / 58	plus
Harvest35	U35_37856	700	3e-25	15 - 74	100	60 / 60	minus

Contig Sequence (700 bp)

>U35_37856 700 Hv_44K_v2
TTTTTTTTTTTTTTTTTAACACTGTAACAACCAAAGTTTGACTCTTTCAGGACAAAGACC
ACACGCAACAACAACAACAGAAATAAAACAGAGTTACAAGCACTTCGCTGCCGTAGTGCC
GTTTTCCATCACCCTCTTCTGGCTTCGATCAGTCAGGTAGAAAGAAAAAAAAAGGAAAAG
GTTCGCAGTTGTCGTCATCATCATCTAATTAAACGGAAGATTCGAAGCCAAAGAATAAGG
GTGCATTCACTGAGACGATCTGCATCTATGATTTCCTCTTCTTTCGAGTCCGGGCGCTCT
TCCATGAGCTGAGAACGGATGATGAACCGCCGCGCCTTAGAATCTTCGGCTTCCTGCCTT
TTCTCTTGCCCGTGTAGCAGGGCTTCAAGATCCCCTGGAGGCCCAACCTGGTTGTGTCTT
CTTCCTTAACGACCGCCATGGGGGCAGCGACGCTCTCATCCTCAGAATGTGCTATGGTTT
CTCTCTTGACAGGTACCTGTTCCCTCTTGACTGATACCCGTAGCCGCTGGCATGGATGAT
TGATCACCTCGAAATTTTGATACCCTCCCTCTGCTGGTTGGTTGTCGATCAACACATCTT
CCGAAGTCTGTAAGCAAAGCAAGATAATGGTAAAGAGCTGACCTCCTTCAAATACACAGT
TCTTTAAAATTGCCACTTTTTGGACTTCTCTATGATTTAG

Homology of Contig U35_37856 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None