- Probe CUST_9522_PI390587928
- Source Contig U35_49831
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_9522_PI390587928 | Hv_44K_v2 | ATTTCTGACAAGATCACACAGGATGCTAGAGGACAGCTATCTTCTAGAAATGCACCATCA | 39 | GeneList: cyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.600 | 1.380 | 1.191 | 0.635 | 0.471 | 0.363 |
| Raw | 147.681 | 172.847 | 148.329 | 115.232 | 32.563 | 27.111 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_23395.1 | 1980 | 2e-24 | 756 - 815 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_16169.1 | 1975 | 8e-25 | 1160 - 1219 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC51761 | 539 | 3e-25 | 40 - 99 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_49831 | 539 | 3e-25 | 40 - 99 | 100 | 60 / 60 | plus |
Contig Sequence (539 bp)
>U35_49831 539 Hv_44K_v2 GCTAAAGCAGAGCTTAAGAAGGTCCATTGTTCTGACACGATTTCTGACAAGATCACACAG GATGCTAGAGGACAGCTATCTTCTAGAAATGCACCATCAGAGAATAAGGGAGAGAAAACC ACCTCCTTTTCCTCTTTGTCCCGAACTGGAAAAACTGCTGAGAGCCGTTCTAGAAGCCCT ACAAGGGAGAAACGGCTGAATGGAATGGCTAAAGTTGGGCCTCAGAAGATGCAGTTGTCA GAGAACTTGCTGCCCAAGACACTGAATGAGGGTGAAGATAAGCTCTCTTCGCAGAGCAAG GAAAATTATTCTTCAGTGCCGCACCGGAAGGAGAATTCTAATTTGAGCAAAGCTTCAGTC AGAAGCCCTCAGGCACATAAACCAGTGGGAAATAATTTGAAGTCGCCACCATCTGGTGCT GCAGCTGCCAGTCCATCACCTGAACCGAAAATGTACCCACGGNGCAATGAGGCAAGTCCC CAGATAAATGGTAAACCATCTGGCGCTGCTAGTCCATCACCTGAACCGAAAATGTACCC
Homology of Contig U35_49831 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |