barSeed - Barley Seed Development Database

Probe CUST_9520_PI390587928

Source Contig U35_49838

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9520_PI390587928	Hv_44K_v2	TCACACTGAAAGAAAAATGGTGTATCCTCAAAGAGGCGACTAGGCTCTATGGGGCTTTCA	325	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.021	0.952	1.193	1.097	0.470	0.744
Raw	27.526	41.214	44.627	65.270	9.424	16.641

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56136.1	1025	2e-24	386 - 445	100	60 / 60	plus	None
Harvest21	ABC51771	510	3e-25	326 - 385	100	60 / 60	plus
Harvest35	U35_49838	510	3e-25	326 - 385	100	60 / 60	plus

Contig Sequence (510 bp)

>U35_49838 510 Hv_44K_v2
GGAGGTCTCCAGGAGGGACTCACCTGAGCGGAGCCGAGTGCCGGCGCCCCGCGCCGCCAC
ACCCCATCCCTCCCCAGGCCGGCCCGTACCCAACCTGAAGACCTCCGTGCAGCGCCGGCG
TGCGATCCTCGGGTGCTCGTCAGTCATCACCCACATCCGGTTAATCCATCGTTGAACCGC
ATAAAGAGGCTGTTGCAGTATCAGCTGGGGATGAAGTTTAGAGTTGTCTGCAGGAAGCTG
TATGATTACGTGAGGTATGATCTAAAAGAGATCGCCTTCCCGTCTTCTCTGCCGGATCCT
CCGGGCACCAAGAGGCGTCCTAAGCTCACACTGAAAGAAAAATGGTGTATCCTCAAAGAG
GCGACTAGGCTCTATGGGGCTTTCAGGGACATCGGTCCTGAGCTCCGTCCCAACGATTAC
AAGAAGGCCAAAGAGGAATCAGACCCCAGCAGCAGTGAAGAGGGCAAAACTAAAAGTGAG
CCTACTGTGCTTGAGGACCTCACCGTGGCA

Homology of Contig U35_49838 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g37140.1	173	1e-55
Arabidopsis v10	None