barSeed - Barley Seed Development Database

Probe CUST_9517_PI390587928

Source Contig U35_25881

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9517_PI390587928	Hv_44K_v2	GCTGAAAACATGTTCTGCTCAACAGCACATCCGAAATCTGGACTTTATGGATACCACTCC	572	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.310	1.610	1.306	0.818	0.377	0.404
Raw	344.209	664.705	459.618	456.108	72.067	86.933

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7880.2	4389	2e-24	3029 - 3088	100	60 / 60	plus	None
MLOC	MLOC_7880.1	3842	2e-24	2790 - 2849	100	60 / 60	plus	None
JLOC1	JLOC1_5214.1	746	8e-25	565 - 624	100	60 / 60	plus
Harvest21	ABC25860	636	3e-25	573 - 632	100	60 / 60	plus
Harvest35	U35_25881	636	3e-25	573 - 632	100	60 / 60	plus

Contig Sequence (636 bp)

>U35_25881 636 Hv_44K_v2
ACTCCTTATGCTGGGTATGATTCCCAACAAAGGGCACATGACATTGGTGCAACTGGTGCC
AATGGTGTGGAGACTGCACAGCCTTCAACTGTTGATGATAAGACTGGTCAGATGGAACAT
CCAGTCATTCTAAGTGGTGAAAATGAAAAACCTTTCATATACATTTTCAACTTGATGGCA
CATTGGGCCATAGAAAAGGATACAAGACCCTATATTCAAGGAAAAATTAAGGGTTTGATC
ACCTCTGTCAAACGATTTCAATTTAGGAATCGCAAAGAGTACGAGCTAATTGTGTGCATA
GATGATGGAAGTCAAATTTCAGAGGCCTTTGTTGACTGTGTTATTGTACGTAACATAATT
GGTCATCCATGCGAGGAGGTTTCAACTGCTGTTTCTGATCCAACCTCAGAATCGTACATC
GTTATGAAACAAATTCTGAATAGATTTCAGCATTATTTGGAGAAATTTGAGGGTACAATG
CTTATTGAGTACAACGGACAATCTTCTGGACCCATTGTGCGTGAGATGAACGAAGGTTGT
TCGACTGCTGATGCATGGCTCCTGCTTCAAAGGCTGAAAACATGTTCTGCTCAACAGCAC
ATCCGAAATCTGGACTTTATGGATACCACTCCGTGA

Homology of Contig U35_25881 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g32090.1	818	6e-70	protein\|expressed protein
Brachypodium v1_2	None
Arabidopsis v10	None