barSeed - Barley Seed Development Database

Probe CUST_9511_PI390587928

Source Contig U35_25887

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9511_PI390587928	Hv_44K_v2	TGCAACCTTTCCGTGTACTTCCTTTTTAATGTATGGTTGAATCAGATGGTACGCAAACCA	1235	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.175	1.200	1.087	0.989	0.353	0.273
Raw	180.261	293.905	228.229	334.787	40.544	34.383

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367292	1956	3e-22	1853 - 1911	98	59 / 60	plus	ABC24606
MLOC	MLOC_356.1	1653	3e-22	1582 - 1640	98	59 / 60	plus	ABC24606
JLOC1	JLOC1_228.1	1996	1e-22	1894 - 1952	98	59 / 60	plus
Harvest21	ABC24606	1295	3e-25	1 - 60	100	60 / 60	minus	ABC24606
Harvest35	U35_25887	1295	3e-25	1236 - 1295	100	60 / 60	plus

Contig Sequence (1295 bp)

>U35_25887 1295 Hv_44K_v2
GGGAGCTCGATGGTTACTGGGCTCGTGCGGTCCAATCAGTGTGAGGAGGCGTTGAGGGTG
TTCAGTGAAATGATCGGGATGGGTGTCGTCCCGAATGAGTCTGCACTGGTGAGCGCTGTC
TCAGCATGCTCGCTGCTGCGGTCGTTAGAGCACGGCGTGTGGGTACATGCGTATGCCAAG
CGGGAGCTGCAGGGGATGAGCCTCATCCTCGCCACAGCCATTGTTGACATGTATGGTAAA
TGTGGGGGTATCCATAACGCCGTCAGGGTGTTTGCTGCAATGCCAGTGAAAAACATCTAC
TCATGGAACTCGATGATTGCTGGGCTGGCCATGAACGGCAGGGAAATGCAGGCCTTATCA
CTCTTCTGGAAGATGCAGATGGCTGGTGTTCGGCCGAATGATATAACCTTCATCGGGTTG
CTGGGCGCTTGTAGCCACTCAGGCCTCGTCGATGAGGGCCGCTGGTTGTTCAACATGATG
GTTAATGGCTTTGGAATCCAGCCAGTCCAAGAGCACTATGGCCTAATGGTTGATTTACTC
GGTCGGGCAGGTCATGTTAGGGAGGCGGTTGATTTTGTGAACAGCATGCCGGTGGAGCCG
CATCCGGGCTTATGGGGTGCGCTTGCTGGCGCCTGCAAAATCCATGGTGAGGTGGAGCTT
GGTGAGGAGATTGCCAAGAAACTCATTGAGCTGGAGCNCCGTCATGGTAGCCGGTACATC
CTCCTGTCAAACATATATGGTGCATCGAACAGATGGGATGACATGGCCACTGTGCGAAGG
CTCCTTAAGGATCGCAAGGTCCCCAAGGGCACTGGCAATGCCATGGTTGGAAATGATGTT
CAGTCTATGAAATCCATGATGGATTAGTATTCCTTTAGACAGTGACATGTCAGGCGCTTT
CCCAGGCTGGGTGGCATGAGGTTGATCACGCTCTACCTTATAGACATCATTGTGCTGAAA
CAAGCCTCCATAGGGGAGAATGTTTGATTTATGTGTTACTGTATACCTAATTTCTTATGT
GGCAGACTGCAATCAACATGGTGCAGAGCTGCAAAATGCTGTCAAGAAGCCGAGAGTTCT
TTGTATTTGAAATTTTTGAATACTTACCTGAAGATGCAGAATTTCAGAAAATATGCACCT
AAGGACTAAGGCATGCATATTTGTAATTAAATTCTAACGGGAAGAGGCAGAACCCGAAAA
GCCATCACGAGGTTCAGGTTCATTGAATAATTTCTTGCAACCTTTCCGTGTACTTCCTTT
TTAATGTATGGTTGAATCAGATGGTACGCAAACCA

Homology of Contig U35_25887 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g41560.1	494	3e-146	protein\|pentatricopeptide, putative, expressed
Brachypodium v1_2	Bradi3g49211.1	498	2e-151
Arabidopsis v10	AT2G02980.1	603	7e-61	\| Symbols: OTP85 \| Pentatricopeptide repeat (PPR) superfamily protein \| chr2:868468-870279 FORWARD LENGTH=603