barSeed - Barley Seed Development Database

Probe CUST_9506_PI390587928

Source Contig U35_37866

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9506_PI390587928	Hv_44K_v2	CATGTCTTGAGCAAAAACCAGAAAAGGTTCATTTCAGAGTTCCAGAAAAAATTTCGTCGC	569	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.646	1.550	1.165	0.715	0.743	0.662
Raw	24.664	20.682	14.788	13.601	3.641	3.329

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373304	2251	2e-24	1380 - 1439	100	60 / 60	plus	ABC48237
MLOC	MLOC_51586.2	979	2e-24	806 - 865	100	60 / 60	plus	None
MLOC	MLOC_51586.1	977	2e-24	808 - 867	100	60 / 60	plus	None
JLOC1	JLOC1_32967.2	436	8e-25	268 - 327	100	60 / 60	plus
JLOC1	JLOC1_32967.1	976	8e-25	808 - 867	100	60 / 60	plus
Harvest21	ABC33598	629	3e-25	570 - 629	100	60 / 60	plus
Harvest35	U35_37866	629	3e-25	570 - 629	100	60 / 60	plus

Contig Sequence (629 bp)

>U35_37866 629 Hv_44K_v2
GGCTGCAGGAATTCGGACGAGGGCAGCCTCCTAGGGGTGGATATTGCTATGGCCCCAACG
ATCCTGTCTCCAACATCATCCTCAACACCATCTGGTATGGCTCCATGTTTCCCACGCCCC
AAAAGTTTGAGCTACAGTTTAAGGTGGATATGATATGCACAGACATGCTTACACGCATTG
AGTGCTGTTCTTTTTACGGCCTTGTTGCCTTCCTTCGCACCTGTCTCCCCTCTATCTCGG
AGCACGATGCAATCTGGTATCTGTTCAGGAGCGATGCTGATGTCCACAAGGCCATCCGTG
AGGCAGTGAAGCATGATCATTTTTTGTCTGGCAGTTACGAGGACGCCTATAAGCAAGCAG
CGGTTGTTTCATGGCATGATGACCCTGATGCGCTGGTGAAATTTGCCACGTCTTCGTTGA
ACATGGAGTCTGCCAAGTTGTTAGCTATATTGCAGGGCACACTCACCAACGACAGAGTTG
AATGCCTCACCATGGCTCTGCCACATAAATATCCACCTACCAAGTCCGAGGAGCAGGCTC
AGCAAGTGATCGAGGCGACGTCTAACTCACATGTCTTGAGCAAAAACCAGAAAAGGTTCA
TTTCAGAGTTCCAGAAAAAATTTCGTCGC

Homology of Contig U35_37866 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g09230.1	546	8e-93
Arabidopsis v10	None