barSeed - Barley Seed Development Database

Probe CUST_9501_PI390587928

Source Contig U35_49847

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9501_PI390587928	Hv_44K_v2	TGTTGGAAAAGCGCATAGAAAGCTTCAAGATGCTGCCTGCAGCAAACAAGAAACCGTTGT	262	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68641.2	2496	2e-24	1894 - 1953	100	60 / 60	plus	None
MLOC	MLOC_68641.1	2767	2e-24	1969 - 2028	100	60 / 60	plus	None
MLOC	AK370007	2889	7e-23	2278 - 2337	98	59 / 60	plus	None
JLOC1	JLOC1_45425.1	2891	8e-25	2080 - 2139	100	60 / 60	plus
Harvest21	ABC51782	480	3e-25	263 - 322	100	60 / 60	plus
Harvest35	U35_49847	480	3e-25	263 - 322	100	60 / 60	plus

Contig Sequence (480 bp)

>U35_49847 480 Hv_44K_v2
TCAACAAGCCTGAGGTCGTTGACCCCTGACTCCATCGAAGGGAAGTCCACACTTCATCAC
TATATTAAGGTTTTCCATGAGCACTATGTGGAGTATGGGCACAAGGTTTTCATCGAGCTC
AAGGAACATGAAGATTATGTAAAGACAGAGATTGAAGACAAGCAGAAACGCTTACAAGCA
GTGAAGCAGTCACTTCTATCCATAGAAGCCAAAGACGAAGAGATAAACAAGCGGGTCGAT
CGGGCCTCCATGGTGTACGATCTGTTGGAAAAGCGCATAGAAAGCTTCAAGATGCTGCCT
GCAGCAAACAAGAAACCGTTGTCGCAAGCAGAGCTGGAGTTCAAGTCACAGCTTGATAGG
TTTGCGGACGTGGAGCTGGACGCTCTGCATACTTCCATTGCTGCCCTGGGCGCAAGGATG
AAACGGTTTGCCCAACCGTCCCTGGGCGGTGGCACAGCCGGCATGGGAGTGGCGCCGTGG

Homology of Contig U35_49847 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g51900.1	773	3e-81	protein\|expressed protein
Brachypodium v1_2	Bradi5g21070.2	854	4e-87
Arabidopsis v10	None