barSeed - Barley Seed Development Database

Probe CUST_9500_PI390587928

Source Contig U35_49848

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9500_PI390587928	Hv_44K_v2	ATTCAACCCCGGTGGCATCGAGATATGCCCCAACCTATTCTGGCTCAGGGGCAGCGCCCT	347	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54108.5	2337	2e-24	368 - 427	100	60 / 60	plus	None
MLOC	MLOC_54108.4	4102	2e-24	541 - 600	100	60 / 60	plus	None
MLOC	MLOC_54108.1	3292	2e-24	1041 - 1100	100	60 / 60	plus	None
MLOC	MLOC_54108.2	3120	2e-24	1041 - 1100	100	60 / 60	plus	None
MLOC	MLOC_54108.3	2649	2e-24	662 - 721	100	60 / 60	plus	None
JLOC1	JLOC1_34818.4	2492	8e-25	356 - 415	100	60 / 60	plus
JLOC1	JLOC1_34818.3	2747	8e-25	363 - 422	100	60 / 60	plus
JLOC1	JLOC1_34818.2	2771	8e-25	401 - 460	100	60 / 60	plus
JLOC1	JLOC1_34818.1	2581	8e-25	414 - 473	100	60 / 60	plus
Harvest21	ABC51783	408	3e-25	348 - 407	100	60 / 60	plus
Harvest35	U35_49848	408	3e-25	348 - 407	100	60 / 60	plus

Contig Sequence (408 bp)

>U35_49848 408 Hv_44K_v2
CTCTTCCTCCACCCCTCCGCTTCAAGGAAAAGCCTGCTCAAACCCCTCATGGCCGCCGCC
CCGTCACCGGCGCCGCCGCGGATCCTCCTCGCCGGCGACGCCCACGGCCGCCTGCATCAG
CTCTTCAAGCGCGTCAAATCGGTGAACCAGTCGACGGGGCCGTTCCACGCGCTGCTCTGT
GTGGGGCAGTTCTTCCCGCCCGAGGTCCCCGAGGGGGACAGCCCGCCGGGGGACGTCGCG
GACTATCTGGAGGGACGGGCCGCCGTGCCCATCCCGACCTACTTCACCGGCGACTACGGC
CCCACTGCTCCTCGCCTCCTCTCGAAGGCCGCTGCTGACGCCCGAGGATTCAACCCCGGT
GGCATCGAGATATGCCCCAACCTATTCTGGCTCAGGGGCAGCGCCCTC

Homology of Contig U35_49848 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g19940.1	614	2e-54	protein\|cwfJ-like family protein, putative, expressed
Brachypodium v1_2	Bradi4g28877.1	609	1e-63
Arabidopsis v10	None