barSeed - Barley Seed Development Database

Probe CUST_9498_PI390587928

Source Contig U35_25890

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9498_PI390587928	Hv_44K_v2	CTTGCATTTATATCAAGGTTATTCATATACGCTGGTCGGTTCAACTTGGCTTATATTGAT	617	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.996	1.690	1.226	0.731	0.240	0.188
Raw	4220.613	5660.517	3583.663	3355.819	390.643	330.057

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_25675.1	2565	4e-23	2489 - 2548	98	59 / 60	plus
Harvest35	U35_25890	686	3e-25	618 - 677	100	60 / 60	plus

Contig Sequence (686 bp)

>U35_25890 686 Hv_44K_v2
TACATCAGAGAGCACAGAACAGAATCGATTCCATGGATGAGACAAGTGTTATCGTGGGTG
CAGAGTCCTCTACCTTTTCGAAGAGGCTATCAGAGGCACAGAAGCAACAGGACGAACATG
ATGAGAGTAAAGAACCCATTGCTTTCAGCAAGAACTTGTTGGCTGAAAAGAAGAAAACAA
AAGCTCCAAAGGAGAACAAGAAACGTGCCCGTGACGATGATGATGTGCCTGCAGAGGAGG
ATGTGGTTGAGGATTTGATCTTGAGTTCGGATGAGGAAGCGGCAGAAGAGGACGATGATC
TCGGATCGGACGAGGATGGCTCCGCGCCTGTTGAAGATGACAGCGACGAGGACTTTGTGG
ACCCAGACAGCGCGTGGAAGAAACAGAAGAAGGAGAAGCTAAAGAAGCGGAACAAGTACC
AACCATCGAACAACAAAGCATCCTCCAAAACCAAAAGGAAACCTCACCCTAAGAAGAAGG
CAAAGCATTAACCAAGCCGGAGATAGTACTGGGCAAAGGCTGTTGGCGATGTGCTATGCT
TTTAGTCATGAGAAACACCTGCCTGTCAGGAGAAATTTTGTTCAATTTGAGAATTGCACA
GCTTCCTTTGTCATTTCCTTGCATTTATATCAAGGTTATTCATATACGCTGGTCGGTTCA
ACTTGGCTTATATTGATGATTTCATT

Homology of Contig U35_25890 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None