barSeed - Barley Seed Development Database

Probe CUST_9497_PI390587928

Source Contig U35_25892

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9497_PI390587928	Hv_44K_v2	TGTAATGAGAGAAGTTCGCGAAGTCATTGCATGATAATCTTGGATGTGCCATCGGTGGGA	345	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.161	1.661	2.385	0.767	0.424	0.271
Raw	28.297	49.754	75.468	35.605	6.256	3.941

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64189.2	2802	2e-24	541 - 600	100	60 / 60	plus	ABC18481
MLOC	MLOC_64189.1	2416	2e-24	543 - 602	100	60 / 60	plus	ABC18481
MLOC	MLOC_64189.3	3053	2e-24	491 - 550	100	60 / 60	plus	ABC18481
JLOC1	JLOC1_42115.1	2987	8e-25	545 - 604	100	60 / 60	plus
Harvest21	ABC25625	535	3e-25	346 - 405	100	60 / 60	plus
Harvest35	U35_25892	535	3e-25	346 - 405	100	60 / 60	plus

Contig Sequence (535 bp)

>U35_25892 535 Hv_44K_v2
AGCCACACCATGTTTGGCTGCGCCAGGCAGCCCGGCATCGTCTACCGCGCGCTCCGCGAC
ATCCTCGACGGCGGAGGGGGCTGCTGCGAGGGCGGCGACGACGACGACGCCGGGTTCGGG
GTCGGGCTGTTCGTGCAGGTCGCCGTGCTCGAGATTTACAACGAGGAAGTCTACGATCTG
CTCGTCGGCAGCGGGCCCAATACTAAAGGGAACGCCCCCAAGGTGAGGCTAGAAGTAATG
GGGAAGAAAGCCAAAAATGCAACTTACATATCTGGAAATGAAGCTGCAAAGATATCCAGG
GAAGTTGCAAAAGTAGAGAAGCGGCGTACTGTCAAGAGCACCCTCTGTAATGAGAGAAGT
TCGCGAAGTCATTGCATGATAATCTTGGATGTGCCATCGGTGGGAGGAAGGCTGATGCTG
GTGGATATGGCTGGCTCTGAAAACATAGAAGCTGCAGGCCAAACTGGATTTGATGCCAAG
ATGCAGACGGCCAAGATCAACCAAGGCAACACGGCTTTGAAACGAGTGGTTGAGT

Homology of Contig U35_25892 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g56540.1	897	4e-88	protein\|kinesin motor domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g54890.1	916	2e-90
Arabidopsis v10	AT4G14330.1	869	2e-73	P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr4:8244228-8247286 FORWARD LENGTH=869