barSeed - Barley Seed Development Database

Probe CUST_9473_PI390587928

Source Contig U35_19731

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9473_PI390587928	Hv_44K_v2	CGTGCTTATGGACTGATGATGTACTTGTAAATGCAAAACATATGCAATCTTAAATTCAGC	935	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.663	1.992	1.224	0.815	0.327	0.287
Raw	1605.343	2996.556	1624.587	1692.464	237.473	228.491

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_8032.1	221	8e-25	118 - 177	100	60 / 60	plus
Harvest21	ABC12221	1022	3e-25	935 - 994	100	60 / 60	plus	ABC12221
Harvest35	U35_19731	1023	3e-25	936 - 995	100	60 / 60	plus

Contig Sequence (1023 bp)

>U35_19731 1023 Hv_44K_v2
GTTGACAAATACCACTTACTGACCTCAAGGACAAAATTCGGCTTCATGATCCATCTGATT
CTGAAGACATCGAGGGAGACATCACGAAATTCTCTGTTATGGCTGCGTGATGAGTTGCGA
ACTCTTTCATGCACATACAAGTGCCGTCATGATGCTGCTGTTGATTTGATTCACATGTAT
GCTTACACAAAGTGTTTTTTCAGAGCCCGAGACTACAAGCCAGTAAAATCTCCACCAGTT
CATATCAGTCCTCTTGATTTAGGTCCCAAATATGCTGATAAACTGGGACCAGGTTTCCAG
GAGTACAGCAAGACGTACCCAGAGAACTATTGCTTAGCCCAGCTCATCTATTGGTACAGC
CAGAATGCAGAACCCGAATCTAGACTGACAAGAGCTAGAAAGGGTTGTATGTCATTACCA
GATGTCTCCTCTTTCTATGTAAAGTCTGTAAAGCCAACACAAGAGCGAGTGTATGGCACC
AGAACTGTGAGATTCATGTTATCACGGATGGAGAAACAGGCCCAACGTCCATGGCCGAAG
GACCGGATATGGGTGTTCAAGAGCGACCCAAGATTCTTTGGCACTCCAATGATGGATGCT
GTGTTAAATAACAATTCTCCTCTTGACAAGGAGATGGTGCATTGGCTCAAGACAAGATCT
AACGTTTTTCTAGGGTAGTCAAAAGGATTGTAGGCAGAGGGCATTGTTTTTTCTCTTCTG
AGATTTTAGTCAACGACATTCTTTTTCCCCTACTCACCTTACCTACCTAATCATGGGAGA
TAGGTTTTAGATGACAGGTTGTACAGTCACCCCCCCCCCCCCCCTCCCCTTCCCTCCCTC
CCTAGCTGTAGAGATGTATTCGACTAATAACTAACAGATCACAGATCATCATCGATTGGA
TAGGGCGCCTCCTCCCCTTTGCATAGAATTGTTTGCGTGCTTATGGACTGATGATGTACT
TGTAAATGCAAAACATATGCAATCTTAAATTCAGCATTGTGTTACAAAAAAAAAAAAAAA
AAA

Homology of Contig U35_19731 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g08210.1	936	2e-127	protein\|SET domain containing protein, expressed
Brachypodium v1_2	Bradi3g15410.1	2244	1e-121
Arabidopsis v10	AT4G15180.1	2335	4e-86	\| Symbols: SDG2, ATXR3 \| SET domain protein 2 \| chr4:8651999-8662178 FORWARD LENGTH=2335