barSeed - Barley Seed Development Database

Probe CUST_946_PI390587928

Source Contig U35_6328

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_946_PI390587928	Hv_44K_v2	AAATCCAGAAGCTGAAGGATCAAGTGCAACTTCTCACAGACGGATCAACAGCAAACGACA	822	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.220	1.413	2.097	0.967	0.300	0.268
Raw	66.579	114.137	153.199	113.887	11.767	11.943

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369530	3858	2e-24	2666 - 2725	100	60 / 60	plus	None
MLOC	MLOC_52557.2	628	7e-23	270 - 329	98	59 / 60	plus	None
MLOC	MLOC_52557.1	3482	7e-23	2335 - 2394	98	59 / 60	plus	None
JLOC1	JLOC1_33693.1	3467	4e-23	2335 - 2394	98	59 / 60	plus
Harvest21	ABC27352	584	3e-25	521 - 580	100	60 / 60	plus
Harvest35	U35_6328	1020	3e-25	823 - 882	100	60 / 60	plus

Contig Sequence (1020 bp)

>U35_6328 1020 Hv_44K_v2
CACTTCAGGAAGAGCCCCAGAAAATGCACAGCAATACAAGTGCTGATCATGACCAGGTTT
CTGACAGGAAATCTGTTCTATCAATTAATGCTTCCGAACAGCTGAGCCCAATCCAAGATG
CAATGTTCTGCTCTTCTCCAAAGATTCACAAGGCAAGAAAGAGCATTGCCTCACCAGGAT
TCTCTCCAAGCAAGCTAAGTGAATCCAGCCCAGGAGAAGCCGATTTGGAAACGTATAGGA
AGAGTGCAGTGCGTTCCTCCTTACAATCGAGCAAGCTTAGTCCCACTGACTCGCTGGCTG
CAAGTCTCCAACGGGGCCTGCACATTATAGAGTACCATCAGCAGAATCCTCCAGCCCCAC
GAAAATCGTTCGTTGGCCTTTCGTTTGATCATTTCGCACTGAACCCCCGCCAGTCAGCAA
AAGCAAGTTCAGCCCTTCAGGCATTACCGGAGGGGGACGCCAGTTCAGCTTCTACCATTT
GTTCATCCTGCAAGAAAGCAATGGATACAAATGATGACCTTTCAGAGGACATAAACTCAG
AGAAGCGGATTGTAATGGCAACTGCTGTCACATCCAATGACTTGGCTAATGCTTCCCTCA
AGGACGGTAACATCTCTTCGACTACTGACTCGAAGAGAGTGGCTGAGCTCGAAGCTGTAT
GTGAAGAACAGGCAGCTAAGATCAAGGAACTGAGCAACTTGATTGAGCAACAAAAGAAGG
GATCAGAAGACGGTGAACAAACCGCTGAAGATAAGATTGCTGAACAATGTGAGGATAGCA
GGACGCCACTCGATGTGTATGAGAGGGAAGCACTTGAAGGCGAAATCCAGAAGCTGAAGG
ATCAAGTGCAACTTCTCACAGACGGATCAACAGCAAACGACAGCCTTCTGGACCAGATAA
GGAACGGCAGCACGGACCAGGAATACGAGCTGGAGAAAGAGAGGCAGAAATGGATGGAGT
CCGAGAGCAAGTGGATATCTCTCACCGAGGAGCTGAGGATGGACCTGGAGTCGAGCCGGA

Homology of Contig U35_6328 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g39020.1	1130	3e-110	protein\|Kinesin motor domain domain containing protein, expressed
Brachypodium v1_2	Bradi1g15330.1	1107	5e-144
Arabidopsis v10	None