barSeed - Barley Seed Development Database

Probe CUST_9465_PI390587928

Source Contig U35_19739

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9465_PI390587928	Hv_44K_v2	TAATGGAGGGATGGGAGTACATGCTAGCTTGATCGCTTGTGTGTACACTGAAACGAATGA	1019	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365127	1498	2e-24	1415 - 1474	100	60 / 60	plus	ABC01615 ABC13527
MLOC	MLOC_77502.1	1827	2e-24	1572 - 1631	100	60 / 60	plus	ABC01615 ABC13527
JLOC1	JLOC1_51687.1	1840	8e-25	1580 - 1639	100	60 / 60	plus
Harvest21	ABC13527	1114	3e-25	1020 - 1079	100	60 / 60	plus	ABC13527
Harvest35	U35_19739	1114	3e-25	1020 - 1079	100	60 / 60	plus

Contig Sequence (1114 bp)

>U35_19739 1114 Hv_44K_v2
GGGATCCTCCAGAGGCTTGGCGCCGACTGGGCCGCCCTCGTCCTCTTCAAGGCCGCCTAC
CTCCTCGCGCTGCTCCTCTTCTCGCTCCTCTCCACCGCCGCCGCCGTCTTCTCCGTCGCC
TCCGTCTACTCCGCCAAGCACGACGCGCTCACCTTCCCGCGGGTGCTCTCCGTCGTGCCC
CGCGTCTGGCGCCGCCTCGCGGCCACCTTCCTCGCCGCCTTCGCGCTCCTCTTCGCCTAC
CACCTCGTCTTCGTCGTCGTCTTCATCGCGCTCCTCGTCGCCACCGACAACGGCTCCACC
CTCGCCGGGCTCCTCGCCTTCGTCGTCGCCATCGCCTACCTGGTCGGGCTCGTCTACCTC
AGCGTCGTCTGGCACCTCGCCAGCGTCGTCTCGGTGCTCGAGGACTACAAGGGGTTCCAG
GCCATGCGCAAGAGCAAGGCGCTCATCCAGGGGAAGCTCTGGACCGTCGTGTTCATCTTC
GTCACGCTCAACCTCGTCTTCGTCGTCGTGGAGTTCGCCTTCCGCGCCTGGATCGTCCAG
GGCGCGCGCCACGGTCTCGGCGCGGGAGGGAGGCTGCTCCTGGGCCTCGTCATCCTGGCT
GCGCTCTGCTCGGTCGTCATGGTGGCGCTCGTGGTACAGACGGTGGTGTACCTGGTGTGC
AAGAGCTACCACCACGAGAGCATCGACAAGAGCAACATCTCCGACCACCTCGAGGTCTAC
CTCGGCGACTACGTCCCGCTCAAGGCCAGCGACGTGCAGATGCAGCACTTCGGCGACGAG
GTCTGACCCCTCCCAAAGATCGACCTGCTTCTCTTTGCTCTCTTCTCTGTAATACCACTA
CTAGTCTAGTCACACAGGAATTGGTACAATTCCATTGCTGGTCATTTATATACCCAAAAC
AAAACGAGATGGGAAGGAAGCTGAAGAGAAGTAGGATCATTTGATCAGCAGTTTCTCAGT
AATTATACTCAGCTTTGCTATGACACGAGGGACAGTTGGATGTTGCTTGTAGTAATTTGT
AATGGAGGGATGGGAGTACATGCTAGCTTGATCGCTTGTGTGTACACTGAAACGAATGAG
GACATGTTGTGTTAATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_19739 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g01590.1	338	2e-69	protein\|expressed protein
Brachypodium v1_2	Bradi3g13250.1	338	6e-67
Arabidopsis v10	None