barSeed - Barley Seed Development Database

Probe CUST_9459_PI390587928

Source Contig U35_1085

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9459_PI390587928	Hv_44K_v2	GCGTATGTGTTTGCTTTATTGCGATGTCGTGAAATCTGAATGCCACTTGGATGTGATAAA	1182	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.277	1.388	1.146	0.937	0.429	0.407
Raw	21772.200	36585.967	26800.533	33990.733	5528.130	5695.557

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61455.1	1586	2e-23	1413 - 1470	100	58 / 58	plus	ABC03378 ABC41187
JLOC1	JLOC1_40160.1	1589	1e-23	1406 - 1463	100	58 / 58	plus
Harvest21	ABC03378	1287	4e-24	1152 - 1209	100	58 / 58	plus	ABC03378
Harvest35	U35_1085	1332	3e-25	1183 - 1242	100	60 / 60	plus

Contig Sequence (1332 bp)

>U35_1085 1332 Hv_44K_v2
TCGAGCACTGTTGGCCTCTGGCTCCCTCCCTCCCACACGGTCTCCGCCTCCCAAATCGCA
TTCCTCTCCTCGCCGCGGAACCCCCCGCCGACGCCGCCGCCGCCGTCCTCCTCTCGCCAT
GGACGCCCCCAAGCCCACCCCGGCCGCCGCTCCCGCCGGCGCCGCCGGCCCGGGGCTCTA
CGCCGACATCGGCAAGAAGGCCAGAGATCTCCTCAACAGGGACTACACCACGGGCCAGAA
GTTCACCTTTACCACCACCGCCGCCAACGGAGCCACAATTACTAGTTCAAGCACAAAGAA
AAATGAAGCTATCTTGAGCGACCTCCAGACCCAGGTGAAGATTAAGAATTTCACAGTGGA
TGTGAAAGCAACTTCAGACTCAAGTGTTGTAACTACAATCACTATTCCTGAGCTGTGCAA
ACCAGGTTTGAAGGGAGTTCTTTCTCTTCCTTTCCCCTATCAGAAGTCTACCCCTGGGAA
GGCTGAACTCCAATACTTGCATCCCCATCTTGGCATCAACGGCAGTGTTGGCCTGAATCC
AAACCCTCTTGTTAACATTTCTGGTGTAATTGGGACTAAGGCTCTTGCTTTTGGTCTTGA
TGTTGCATTTGATACTGCCTCTGGGGACTTCACCAAGTACAATGCTGGAATGAGCCATAC
TAACCAAGATCTTACTGCTTCGTTGATGCTGAACAACAAGGGAAACACCCTGGCTGCTTC
CTACTACCACCAGGTGCAGCTCACCACTGCTGTGGGAGCAGAGATCGCTCACAGCTTCTC
GAGCAACGAGAACACCATCACCGTGGGGACGCAGCACGAGCTGGACCCCCTGACCACCCT
TAAGGGGCGCTACAACAACTTTGGCATCGCAAGTGCGCTCATCCAGCACGCGTGGAGGCC
CAAGTCTGTCATCACCTTCTCCACCGAGGTTGATACCAAGGCCGTTGAGAAGAGCCCCAA
GTTCGGGCTGGCCCTGTCACTCAAGCCCTGATGTGGGATTTGCGGGTGCATTAGGATGCT
AGCATTTTGGTACCATCAGCTCTTGGTCCAGTGAACAAAGCTTGGACGGACGGAACTTGT
AATGCCCAACTTTGGTGATGCGACAAACTTATCTGTCGTTTTTAGCCTGCTACCCGAGGG
GTTTCTACCCAGTTGATATGTGCTACTGGCCGTTATGCACGAGCGTATGTGTTTGCTTTA
TTGCGATGTCGTGAAATCTGAATGCCACTTGGATGTGATAAAAAAAAAAAAATGTGTTTG
TGTTTGCTTTGGTATTTAAAACAAAATAAAGAAATCGGAATGCCACTTGGATGTTAAAAA
AAAAAAAAAAAA

Homology of Contig U35_1085 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g45950.1	281	3e-111	protein\|outer mitochondrial membrane porin, putative, expressed
Brachypodium v1_2	Bradi2g18630.1	279	1e-120
Arabidopsis v10	AT5G15090.1	274	6e-82	\| Symbols: VDAC3, ATVDAC3 \| voltage dependent anion channel 3 \| chr5:4889641-4891389 REVERSE LENGTH=274