barSeed - Barley Seed Development Database

Probe CUST_9458_PI390587928

Source Contig U35_1086

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9458_PI390587928	Hv_44K_v2	ACTTGATGAACTGGTGCTTCTCCCTTATCAATTTTAGTTGTTGACACGTGTGCTAAAAAA	987	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.061	1.816	1.140	0.962	0.377	0.438
Raw	2054.063	5346.940	3045.067	3903.813	564.221	703.259

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52661.2	1211	3e-22	1145 - 1200	100	56 / 56	plus	ABC03294 ABC03295
JLOC1	JLOC1_33761.1	1649	1e-22	1137 - 1192	100	56 / 56	plus
Harvest21	ABC31637	678	5e-23	35 - 90	100	56 / 56	minus
Harvest35	U35_1086	1058	3e-25	988 - 1047	100	60 / 60	plus

Contig Sequence (1058 bp)

>U35_1086 1058 Hv_44K_v2
CTCCATCTCCCATTCTTCCCTCCCGTCCCCCACACCGCTGGGACTTCTCCCCGAACCGCC
GCCATCGCCATGGCAGCCGCTGTTGCGCCGGTCATCTCCCCGAAGGAAGATCTCCCCCCT
CCACTCAACTCCGCCTCCGAGCCCCCTCCGCTCTTCGACGGCACCACCAGGTTGTATCTT
GCATATCACTGCCCGTACGCGCAGCGCGCTTGGATTACCAGGAACTGCAAGGGCTTACAG
GACAAGATCAAGGTAGTCGCCATAGATCTGGCAGACAGGCCAGCTTGGTTCAAGGAGAAA
GTTTACCCGGACAACAAGGTGCCTGTCCTGGAGCATAACAACCAGGTGAAAGGAGAGAGC
TTGGATTTGGTCAAGTACATTGACAGCAACTTTGATGGCCCGGCATTACTACCTGATGAT
TCTGCAAAGAAGCAGTTTGCTGAGGAACTGCTTGCGTTCAGCGATGGGTTTAATAGTGCA
TTTTTCTCATGCTTACGCTCCAAGGGAGATGTATCAGCTGAAGCTGCTGCTGCTGTGGAT
AAAATAGAAGCTGCCTTGGGAAAGTTCAGCGACGGACCATTCTTCCTTGGCCAGTTCAGT
TTGGTGGACATTGCATATGTGCCGTTCATCGAAAGGTTTCAGATATTCTATTCTGGTATC
AAGAAGGATGATATCGCCAAGGGCAGGCCCAACCTTCAGAAATACATTGAGGAAGTGAAC
AAGGTGGACGCATATACACAGACCAAACTGGACCCACAATTTCTGCTTGTTCAAATGAAG
GAGAAGTTTGGCATTGCTTGAAGACGTGAGCAAGGATAACCAACATGCCAAGGAGCCACC
GCAGCATAGCAGAAGATGAAGCATTTATATATTTCGAATAAGACATGCATGCCATGCGTA
CAATAACAAATAAACTGGGTCGTACCGTAAACTTTTCTTATCACGTGACGACGGAGGATC
ATTCTGTGTTGTAACGAATGCTCGTGAACTTGATGAACTGGTGCTTCTCCCTTATCAATT
TTAGTTGTTGACACGTGTGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_1086 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g17470.1	246	1e-109	protein\|IN2-1 protein, putative, expressed
Brachypodium v1_2	Bradi1g66030.1	302	3e-114
Arabidopsis v10	AT5G02790.1	235	1e-78	\| Symbols: GSTL3 \| Glutathione S-transferase family protein \| chr5:632877-634858 FORWARD LENGTH=235