barSeed - Barley Seed Development Database

Probe CUST_9455_PI390587928

Source Contig U35_1089

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9455_PI390587928	Hv_44K_v2	GCACTAGCCGTAACTATTTACAGTACTATTTACTGGAGTGATGTCTGGTTCATTTAATTA	1570	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.047	4.412	1.194	0.720	0.404	0.727
Raw	348.254	415.431	97.001	97.673	17.315	36.702

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59790.1	1731	2e-24	203 - 262	100	60 / 60	minus	ABC10558
MLOC	AK354847	4208	7e-23	1414 - 1470	100	57 / 57	minus	ABC02438 ABC02441 ABC02443 ABC02445 ABC02447 ABC06963 ABC10558
JLOC1	JLOC1_38928.1	1621	8e-25	93 - 152	100	60 / 60	minus
Harvest35	U35_1089	1702	3e-25	1571 - 1630	100	60 / 60	plus

Contig Sequence (1702 bp)

>U35_1089 1702 Hv_44K_v2
GAATTCCTCTTTCTCTGGGGGCCTACAAAAGCAGTCACCGACACTCTCCTAGCTCAGGCC
AAGCTCCTCAGCCATGGCGGCCATCACGGCGGCTTTCCTCCTCCTCCTCGCCGCCACAGT
CGCCGCGGCCGCCGACCTCTCCGTCTACCACAACGTCCACCCTCCGTCCGCCTCCCCGCT
CGAGTCCATCATCTCGCTCGCCCGCGACGACGACGCGCGCCTCCTCTTCCTCTCCTCCAA
GGCCGCCTCCACCGGCGTCACCTCCGCGCCAGTGGCCTCCGGGCAGACCCCGCCCTCCTA
CGTGGTGCGCGCCGGGCTCGGCTCGCCGGCCCAGCCCGTCCTCCTGGCCCTCGACACCAG
CGCCGACGCCACCTGGGCGCACTGCTCCCCGTGCGGCACCTGCCCCACCAACAGCCTCTT
CGTCCCGGCCAACTCCTCCTCCTACGCGCCCCTCCCCTGCTCCTCCTCCATGTGCTCCAT
CCTCCAGGGCCAGCCCTGCCCGGACCGGGACCCCTACGACAGCGCGGCGCCGCTGCCGTC
GTGCGCCTTCTCGAAGCCGTTCGCCGACGCCTCCTTCCAGGCGGAGCTGGCCAGCGACTG
GCTGCATCTGGGCAAGGACTCCATCCCCAACTACGCGTTCGGGTGCGTGGGCTCGGTGAG
CGGGCCGACGTCCAACCTGCCGAAGCAGGGGCTGCTGGGCCTGGGCCGGGGCCCCATGGC
CCTGCTGTCCCAGGTCGGCAACATGTACAACGGCGTCTTCTCCTACTGCCTCCCGAGCTA
CAAGTCGTACTACTTCTCCGGCTCGCTCCGGCTGGGCACCGCCGGCCAGCCCCGGGCGGC
GAGGTACACGCCGATGCTCAAGAACCCCCACCGCTCGTCGCTCTACTACGTGAACGTGAC
GGGGCTGAGCGTGGGGCGGTCCCCGGTGAAGGTGCCGGCGGGATCGTTCGCGTTCGACCC
CAGCACGGGCGCCGGCACGGTGGTCGACTCCGGCACGGTCATCACACGGTGGACGGCGCC
CGTCTACGCGGCGCTGCGGGAGGAGTTCAGGCGCCACGTCGCGGCGCCGAGCGGGTACAC
GTCGCTGGGCGCGTTCGACACGTGCTTCAACACGGACGAGGTGGCGGCCGGGGGCGCGCC
GGCCGTGACGATCCACATGGACGGCGGCGTCGACCTGGCGCTGCCCATGGAGAACACGCT
GATCCACAGCAGCGCGACGCCGCTGGCGTGCCTGGCCATGGCCGAGGCGCCGCAGAACGT
CAACTCCGTCGTCAACGTCGTCGCCAACCTGCAGCAGCAGAACCTCCGGATCGTCTTCGA
CGTCGCCAACTCGCGCGTCGGCTTCGCCCGGGAGTCCTGCAACTAGTTTCCTTTCCCACC
GGACGACTTTCCTTCACGCGTTCGCGCAGTTAGTCGAGACATTAGCCATGCATTTGGGTG
TACGTACGTACGTACGTATGATTGTTAATCTCCGGCTTAATTTTCAGTGTGTGCAATAAG
GAATGTGGCATCAAAGTTTGTCAAAAAAAAAAAAAAAAATGTCATTAGAACTAGAGAATT
ACCACGTACTGCACTAGCCGTAACTATTTACAGTACTATTTACTGGAGTGATGTCTGGTT
CATTTAATTAACTTGTTTGTTTCGTTAAAAAAAAAAAAAAAAAAGTTCCAGGCTTTGACC
CTGCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1089 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g08790.1	439	0.0	protein\|aspartic proteinase nepenthesin precursor, putative, expressed
Brachypodium v1_2	Bradi1g72110.1	433	0.0
Arabidopsis v10	AT1G09750.1	449	2e-109	Eukaryotic aspartyl protease family protein \| chr1:3157541-3158960 FORWARD LENGTH=449