barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_944_PI390587928Hv_44K_v2ATGTTTGGTTTGGAACCATGTCGATGTGCAAACTTTGAGTAACCTCAATTCTCATTTTTT822GeneList: blue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.2841.4881.0310.9800.4320.436
Raw 361.065658.287405.700588.38693.966101.397



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
JLOC1JLOC1_24719.113438e-251248 - 130710060 / 60plus
Harvest35U35_63309383e-25823 - 88210060 / 60plus



Contig Sequence (938 bp)

>U35_6330 938 Hv_44K_v2
CCCGAATCAACCAGTAGAACTGTGAGGGGGCGGGTACACGATAAAGGAGCTCCCTTGTGC
CTGACCGCCAAAGTCAAGGAGAGTACATCACCTACAACCAAGCCTGTCTTGAACACACAC
CCTACTCATCTAGCAGATCGCATCATCAACACTGAGCATAGAGCTGTCTCTCAGGAGGAC
ACAGGGCCCTCCGATGACCCTTTCTTCGATGCGATCCTATCCTATCCCACCATCAACACA
AGCGACAGAGCTGCCTCTCGGGATGATCCGGTGGCCTTCGAGGACGACCCTTTCCTGGAC
GTGATGCTAGCAAACCGCGACATCTATACCGAGGAGAGAGTCGCTTCTCACGAGGACGTG
AGGCGGACTTCCAGCGACCAGCCTTTCCTGGATGTGATCCAGAACGTGTGCGGACTCGAG
CATAGGCTGCAGAGACTGAAGGGGGACATGCTATCATCATCAGCAGCACCAGGCGGCGCT
GGAACCACAGAGCGCGACCTGCAGAGCCAACTAGTGGTTCTCGTGCCAACCGCCGAGCTG
AAGGACAAATCACAGCCTGGCATCTGAAATTCCGGGTGCGGATGCGACGCTCCGTTTGCG
TGTTGTCGATAGGAGTTACTAAAACATATAGAAGAAATAGTGTAGAGAAGGAGAAGAGAA
AGAAAAGTAGTGGCTCTAGTCTAGGGTTCTAGCCGACAAGGGGCCTCAACCGTGGTCGTT
ACTGTGTGTCACATTGAAGTGCGTCTTCGTTGTTACTTAGTATACAAGGGCAGTTGTTAC
TGGTTTTAATGGGTTGGAGTTATATACTTTTCGGGGTTCAAAATGTTTGGTTTGGAACCA
TGTCGATGTGCAAACTTTGAGTAACCTCAATTCTCATTTTTTTTCCCATTTTACTAAAAA
AAATCAGTTTTACCTGCAAGTAAAAAAAAAAAAAAAAA



Homology of Contig U35_6330 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2Bradi3g03747.17373e-75
Arabidopsis v10None