barSeed - Barley Seed Development Database

Probe CUST_9433_PI390587928

Source Contig U35_19751

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9433_PI390587928	Hv_44K_v2	TACCTGATATATTTGCATGTGTTCAGTGTGTACATCATGCATGTATTGAACCTATGTGCA	1357	GeneList: black MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.117	0.097	0.312	2.269	5.931	8.889
Raw	2.908	2.986	19.377	219.688	197.305	323.856

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_37845.1	1543	8e-25	1482 - 1541	100	60 / 60	plus
Harvest21	ABC11340	1019	3e-25	928 - 987	100	60 / 60	plus	ABC11340
Harvest35	U35_19751	1449	3e-25	1358 - 1417	100	60 / 60	plus

Contig Sequence (1449 bp)

>U35_19751 1449 Hv_44K_v2
CTTCATCATTTCATTTCCCCCAATATTTTGCCACCCTAGAACCAATTTTCCAGACAGCCT
CCGCCATGGCAGACCACATTCAAGTTCAGCGACAACAACTAAAGTTTCCGACGGGGTTCA
GGTTTCACCCGACGGATGTGGAGATCATCACCTCCTACCTGGTCCCTAAGGTGTTGAACA
AAGCATTCAACGCCATAGCGGTCGGGGAGGTGGACCTGAACAAATGCGAGCCGTGGGAAC
TCCCCGAGAAGGCGAACATGGGGGAGAAGGAGTGGTACTTCTTCTCCCAAAAGGACCGCA
AGTACCCCACCGGTATACGGACCAACCGGGCCACGGCCGCCGGCTACTGGAAGGCCACTG
GAAAGGACAAGGAGGTCTTCCACCAGGCGACCAAGAGTCTCATCGGCATGAAGAAGACGT
TGGTCTTCTACATGGGTAGGGCGCCTAGGGGGGAAAAGACCAACTGGGTAATGCACGAGT
ATAGGCTTGAGAGTGGAAAGCAAGGAACACCTGGCCTACCCACCGACATCACCACCGCCG
CCGCCATTAACGCATCTTCCAAGGAGGAGTATGTGGTTTGCAGGATATTCCATAAGAGCA
CTGGACTCAAGAAGGTTGTGATGTCGTCGTACGCCATTCCCATGCCAATGTCCATGGGAG
CAGCGCAGCAACATGGCTTCCTTGAATCTGGTGCATTGCCTTCTCTCATGGGCTATGGCA
CATCATCGTCATCACCGGCGCCCCCATCGTTGCTACCTGCAGCTTCTTCATACCAGCTGC
ATAACGTCGGGGTGAGCTCGTCTATGATGGGTAGCGCGATGCTCCCGATGATGAATGACC
ACTACTTTGGGAACCACCACTACCAGAAGATGCCCACCCCACCACAGCCACTGATGTCGT
CCTACCACCAAGACCACCACCAGCAACAACAACAATTGATTCAAATGCCGATGCAAATGC
AGATGGGTGCAGACGAGGGCCTCATGGTCGGGGTCGAGCCTGGGAGCGGGCCGTCGTCCA
TATTGTCGCAGGAGGACACTGTGACCGGGTTGAGCAGCAATGGCGTTGGAACAACCGCTG
ATGAGATCTCGTCAATGAACATAGGCATGGATGGCATGTTGAAGTATTGATAATCAGATG
ATCCAAGTGCTGCTATATATATGTATGCATGCATAATCATCGATCAAAAGATGGATTCAT
ATATACCACCATCTATATATATTGGTTTGCACCGCATTTTATTTTTCAGTGTGAGAAGAG
AGCTTGTATGCATTACTTGGCCTGGCTTGCCTCTCTCCTGTGCTAGTATTGTGTGTATGT
GTTGTGTACTGGCCTGTATATGCCACCCACCGATGTATACCTGATATATTTGCATGTGTT
CAGTGTGTACATCATGCATGTATTGAACCTATGTGCAATAAACTATTTTATATAAAAAAA
AAAAAAAAA

Homology of Contig U35_19751 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g29840.1	334	4e-73	protein\|no apical meristem protein, putative, expressed
Brachypodium v1_2	Bradi4g34157.1	355	2e-69
Arabidopsis v10	AT5G07680.1	329	2e-72	\| Symbols: ANAC080, ANAC079, ATNAC4, NAC080 \| NAC domain containing protein 80 \| chr5:2436092-2437322 FORWARD LENGTH=329