barSeed - Barley Seed Development Database

Probe CUST_9422_PI390587928

Source Contig U35_19762

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9422_PI390587928	Hv_44K_v2	GACTTTCTGTCAGTTTGTCCACTGCAAATGAATTCACTGATCGAATATGTAGAAGGCAAA	1360	GeneList: mediumpurple3 MasterList: Hydrolysis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.118	2.879	1.183	0.827	0.328	0.510
Raw	508.542	536.455	192.590	205.260	31.645	50.697

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62791.1	1658	2e-23	1 - 58	100	58 / 58	minus	ABC12694
JLOC1	JLOC1_41113.4	1788	3e-24	1648 - 1706	100	59 / 59	plus
JLOC1	JLOC1_41113.3	2009	3e-24	1869 - 1927	100	59 / 59	plus
JLOC1	JLOC1_41113.2	1719	3e-24	1579 - 1637	100	59 / 59	plus
JLOC1	JLOC1_41113.1	1400	3e-24	1260 - 1318	100	59 / 59	plus
Harvest21	ABC12694	1434	3e-25	1361 - 1420	100	60 / 60	plus	ABC12694
Harvest35	U35_19762	1434	3e-25	1361 - 1420	100	60 / 60	plus

Contig Sequence (1434 bp)

>U35_19762 1434 Hv_44K_v2
GGTCCGTGGAAGGATTCGGGGCCGTGGGCGACGGGGTCACGTCCAACACGGCGGCGTTCC
AGCGCGCCGTGGCTGCTCTGGAGGAGAGGGGCGGCGGCGGCGGCGCCAGGCTGGAGGTGC
CGGCGGGGCGGTGGCTCACGGGGAGCTTCAACCTCACCAGCCGCTTCACGCTCTTCCTGC
ACCATGGCGCGGTCATCCTCGGCTCCCAGGATCCAGAAGAGTGGCCTCTCATTGCACCAT
TGCCGTCTTACGGGCGCGGAAGGGAAAGATTAGGACCGCGCCACATTAGCCTCATTCATG
GACAAGACCTAAATGATGTTGTTATTACTGGTAGCAATGGGACCATAGATGGCCAGGGCA
GGATGTGGTGGGAGCTGTGGTGGAACCGGACTCTGAACCACACAAGAGGTCATCTCATCG
AGCTCGTCAATTCAACCAACGTCCTGATCTCCAATGTCACCCTACGCAACTCCCCGTTTT
GGACAGTGCATCCGGTCTACTGCAGAAACGTGGTGATAAAGGATTTGACTATACTAGCTC
CCCTGAATGCTCCAAACACCGATGGCATCGATCCAGACTCAAGTTCAGAAGTTTGTATCG
AGGACTGCTATATTGAAAGTGGGGATGACCTGGTTGCTGTCAAGAGTGGCTGGGATCAGT
ATGGAATATCTGTAGGCAAACCCAGCTCAAACATTATCATCCAGCGGGTTTCAGGCACCA
CACCTACGTGCTCCGGTGTGGGTTTCGGAAGCGAGATGTCGGGTGGGATATCAAACGTGC
TTGTCCGCGACCTCCACATATGGAACTCCGCTTCCGCAGTAAGGCTCAAGACCGATGTGG
GGCGCGGCGGGTACATAACCAACATCACCATCGCCAACGTGACGATGGAGAAGGTCAAGG
TGCCAATAAGGTTCAGCAGGGGTTCAGATGATCACTCTGACGACAAGTATGACCGGACAG
CGCTACCCATGATCAGTGGCATTCATATTGTCGACATTGTTGGCGTGGATGTGCAGCGCG
CACCAATGCTGGAGGCGGTGCACGGCGCGGTCTATGAGGGGATCTGCTTCAGAAACGTTA
GCCTGAGAGCGATAAGGCGTCAGGTACGGTGGCAATGCGAGTCTGTGTATGGAGAGGCGC
ATGAAGTTTTCCCTGCACCTTGTGAAGAGTTGAGGAATAATGGGTCTTCTTCTTCTTGGT
GTGGCCTTCCCTGAGCAACTGTACAGAACTTGTAAGATTTTGATGGGTGAAATGGTGTGT
CTATACTTGTGTTTAGAGAAGGACAAAGATAGAACTTACAGGCAGATCCAACACTGAGAC
TTGTATTCTTTGTTTTGTAAAACGTCTAGAGGGCACAAAGGACTTTCTGTCAGTTTGTCC
ACTGCAAATGAATTCACTGATCGAATATGTAGAAGGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_19762 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os08g01600.1	483	protein\|polygalacturonase, putative, expressed
Brachypodium v1_2	Bradi3g13260.1	486
Arabidopsis v10	AT4G33440.1	475	Pectin lyase-like superfamily protein \| chr4:16092020-16094732 FORWARD LENGTH=475