barSeed - Barley Seed Development Database

Probe CUST_9415_PI390587928

Source Contig U35_19769

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9415_PI390587928	Hv_44K_v2	CAGTGATAGCATGCTGTTGCTGAATTGTGAACGATATCTATCTATATATAAAGGGGAAAA	1098	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.109	0.315	1.010	1.756	1.221	1.364
Raw	262.393	1099.385	3249.867	8621.407	2151.097	2629.743

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373250	1601	2e-24	1530 - 1589	100	60 / 60	plus	ABC11375 ABC11376
MLOC	MLOC_65547.1	2297	2e-24	1116 - 1175	100	60 / 60	minus	ABC09613 ABC11375 ABC11376
MLOC	MLOC_65546.3	2071	2e-24	734 - 793	100	60 / 60	minus	ABC09613 ABC11375 ABC11376
MLOC	MLOC_65546.2	2334	2e-24	1005 - 1064	100	60 / 60	minus	ABC09613 ABC11375 ABC11376
JLOC1	JLOC1_43135.1	1807	8e-25	1121 - 1180	100	60 / 60	plus
JLOC1	JLOC1_43134.4	2715	8e-25	1385 - 1444	100	60 / 60	minus
JLOC1	JLOC1_43134.3	2216	8e-25	886 - 945	100	60 / 60	minus
JLOC1	JLOC1_43134.2	2069	8e-25	739 - 798	100	60 / 60	minus
Harvest21	ABC11376	397	3e-25	314 - 373	100	60 / 60	plus	ABC11376
Harvest35	U35_19769	1182	3e-25	1099 - 1158	100	60 / 60	plus

Contig Sequence (1182 bp)

>U35_19769 1182 Hv_44K_v2
GCCGGAGCCGCGCGCGGCGCCGGGGATGCCGTGGCGTGGGTCTTCCAGAAGGTACACTTC
GAGTCGCCCGACCTCGCCGTGGGACTGCTCGGAATCGTCGCGTCCTGCCTCGGCAACGCC
GTGGAGATGGAGATGGAAAGGATTAGGGCCAAGGAGGCCGAGGAGTCGGCCAGCAAGGCC
AAGGCCACCGCCGTCGATGACGATGACGACGGCGAAGACGACGCGGAGGAGGATCTGCCG
ATGCTGGTGGGGCTGGACGTGGAGAAGGAGCTCTGGGCCAGGATCGGCATCCATCATGAG
GAAGACGACGACATGCCGCTGGGCGTCGACGACGACGAGCAGGAGGCCATCGACGCCGCC
CGCGCCGGCATACGGAAGGCCGCGTACGAGCGGATCATCGCCACCTCCGAAGCCAACTCG
CTCATCCTCTCCAACTACGCGCAGCTCCTCTACGAGTTCGACAAGGATCTCGACAGGGCG
GAGGACTACTTCAAGCGTGCGGTGGCCATAGAGCCGCCCGACGGCGAGGCGATGCGGAGG
TACGCGGTGTTCCTCTGGCAAGCCCGCGGCGACCTGGCCGGCGCGGAGGACATGTTCACG
GGCGCCATCGACGAGGAGCCGGACAGCAGCCACCACCGGAGCAGCTACGCGTGGTTCCTC
TGGATGACCGGTGGCGTGGAGACCTGCGTCATCGACTCCGGCAACAACTCCGGCAGCAAC
AACGAAACCGAATGAAACCGATCGCCGGAACAAGCAGCGCCACCCGCGACCTCATCTCGA
GCCAAAGACAATTAAAGACCGACCTCACCGGCAGGTGCCCGGCCGTGCCGGCGAGGCTGC
CGGCCGTTTTAGATGGTGCATCTAGGCATATATTGCGCACTGTCCGTGAGTAGCATCGGC
CCTTGTAGGGGTCATGTCATACATACTAGGGTGCGCGTGCGAGCATGGCATGCAGGAGCT
GAACCCAAGGGGGAGGCGAATAATGTTGATGTTGTCAAGCAAGCGCACATATATATACTC
CGTAGTAAACTAGGGTCTCATCAATTCATGTGTGGATTTGGAATAAAGCATGCATGCGCC
ATCCAGCTCATGCATCATCAGTGATAGCATGCTGTTGCTGAATTGTGAACGATATCTATC
TATATATAAAGGGGAAAAAACATGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_19769 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g35800.1	364	2e-88	protein\|expressed protein
Brachypodium v1_2	Bradi3g30140.1	348	2e-104
Arabidopsis v10	None