barSeed - Barley Seed Development Database

Probe CUST_9414_PI390587928

Source Contig U35_19770

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9414_PI390587928	Hv_44K_v2	GAAGAAGAGCATTGCTGGCACAGAGGCAGAGTAAACGAAAATAATATTGTATTGATTATT	502	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.458	4.759	1.307	0.629	0.244	0.367
Raw	187.902	214.832	50.509	42.610	4.016	8.071

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_29336.1	1284	8e-25	588 - 647	100	60 / 60	plus
Harvest21	ABC13458	678	3e-25	527 - 586	100	60 / 60	plus
Harvest21	ABC13457	678	3e-25	503 - 562	100	60 / 60	plus	ABC13457
Harvest35	U35_19771	678	3e-25	527 - 586	100	60 / 60	plus
Harvest35	U35_19770	702	3e-25	503 - 562	100	60 / 60	plus

Contig Sequence (702 bp)

>U35_19770 702 Hv_44K_v2
GGGACGCACAGGACCAGGAGCGTGCCAGAGAAGAGCTTGCAGGTGAGGACATGGCCGCAA
CGGCGTACTCCACGGCGCTTCTGGGCGGAGCAGGAGCACGGCTCCCCGTCGTCGTCGCCA
CCGCCGCCGCGTCGCCATCCGTTCTCCTCCCACGGCGTAACTTCTCCCCGCTTCGCCTCC
AAGACGCACCGCGGCTCCCTCTGCTCCCGGCGAAGGCCTCCTCCGATGACACCTCGACTT
CAGCCGCGAGCGGCGACGAGCTCGTCGACGACTTGAAAGCCAAGTGGGACGCCGTCGAGA
ACAAGTCCACCGTGCTGACGTACGCCGGCGGCGCCATCGTCGCCGTATGGTTCTCCTCCG
TCATCGTCGGCGCCATCAACTCCCTGCCTCTGCTTCCCAAGATCATGGAGCTTGTTGGGC
TCGGCTACACTGGATGGTTCGTGTACCGCTACCTCCTCTTCAAGGAAAGCAGGAAAGAAC
TGGCCGACGACGTGGAGTCCTTGAAGAAGAGCATTGCTGGCACAGAGGCAGAGTAAACGA
AAATAATATTGTATTGATTATTTTTTATTGGACAATTATTCTGAAAACGCTTATCAGCGG
GTTTCCTTTTCCTTTTAAACAATATTTGTCATTTTCATTGATTAAGGAAGAAGGTTTAGA
CAAAAAAAAAAAAAAAAAGAATAAAAGATATAAAAAAAAAAA

Homology of Contig U35_19770 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g49870.2	160	2e-64	protein\|expressed protein
Brachypodium v1_2	Bradi1g43950.2	155	1e-57
Arabidopsis v10	None