barSeed - Barley Seed Development Database

Probe CUST_9410_PI390587928

Source Contig U35_19774

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9410_PI390587928	Hv_44K_v2	TACTTTGAGACACGATTGTTCTGGGTCCAAGGTTGAAAGAATAAGTCAATTTGAATTTTG	1161	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.566	1.863	1.204	0.765	0.212	0.281
Raw	597.645	1123.032	616.786	626.184	61.336	86.309

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63300.3	2448	2e-24	2365 - 2424	100	60 / 60	plus	ABC18817
JLOC1	JLOC1_41449.1	2376	8e-25	2285 - 2344	100	60 / 60	plus
Harvest35	U35_19774	1245	3e-25	1162 - 1221	100	60 / 60	plus

Contig Sequence (1245 bp)

>U35_19774 1245 Hv_44K_v2
CAATGATGAAGAATTTCTGTCCTACAAGTATATGCCAAAGGCGGACTTGACCAATGCATT
GCACAAGAAACCTGTGGACACTGATGAAGACTTGCACTCATTGGATTGGATAACTAGACT
GAAGATCGCCACTGGTGTAGCCGAGGCCATGTGCTTCCTTCATGACGAGTGCAGCCCACC
ATTCGTTCACAGAGATATCCAAGCAAGCAGTGTGCTTCTTGATGATAAATTTGAAGTGCG
ACTCGGAAGTATGAGTAACATATGCGCTCAGCAAAGTGCAGGAAGCCAGAACGTTTTCTC
TCGGATCTTGAGATCATCAAAGTCCCTTGACAAGAACACATCAGGCCCACCAGCAACTTG
TTCATACGATGTTTACTGCTTTGGGAAGGTGATCCTTGAGCTAGTAACAGGCAATTTTGG
TGTAAGTGGATCAAATGATGCTTGCTCTGAGGAGTGGTTGGCAAACACAACAAATCGCAT
CAGTACCAGTGACAAGGATAGCATTGCAAATATCATCGATCCTTTACTTGTCGTTGATGA
GGACCATCTTGAAGAAGTTTGGGCAGTGGCGATCGTCGCAAAGACGTGTCTAAACCCAAA
GCCGTCAAGGCGTCCCTCTGCTCGCTACGTCTTGAAAGCCCTGGAGAATCCGCTGAGGGT
GGTCCGAGCGGGCTCCCGGTCCAACTCAGCAAGGCTCAGGAGCTCATCATCCCGGAGCTC
ATGGCAGTCTGCTTTTCTCCAGGGCAATCGTTACCAGAGCTACGAAGTCATGTCACCGTC
AGGGCGAATGCTTGATCGCAGAAGCTCAGTTAGGTCACATATTAGCGGGGGAGAAGCTTC
CTCGTCCTTCAAGAGATCTTTGCGGGAGATTGCTCCGGACCCGCAAGTGCTGGACGAAGA
TGTCGCTGTGTAGAGAAAAGAGAAGGTTCTATCCAGAATTTCTTTGAGGTGTTGGTGATT
CTTCCTTACCTGTGTATAATTGTCAAGGTCAGAACTGTGCATAAAGAGAGGCTAAGTCGT
GGGTTTTCCTTGATTGGCGCATGGAGATGGTACATGATGTTTGCAGAGTGCACATAGAGC
AACAACATTCAGTACGACACAATTAATTTCTTTTGACCAAATCACATTGATTTTGACATA
ATCTGTAATTGCCAGTTTGATTACTTTGAGACACGATTGTTCTGGGTCCAAGGTTGAAAG
AATAAGTCAATTTGAATTTTGTATTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_19774 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g04220.1	773	2e-152	protein\|wound and phytochrome signaling involved receptor like kinase, putative, expressed
Brachypodium v1_2	Bradi1g57910.1	718	8e-166
Arabidopsis v10	AT2G16250.1	915	6e-74	Leucine-rich repeat protein kinase family protein \| chr2:7039682-7042933 REVERSE LENGTH=915