barSeed - Barley Seed Development Database

Probe CUST_9409_PI390587928

Source Contig U35_19775

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9409_PI390587928	Hv_44K_v2	GGCGTCTATGCCATATTTGTAGAGACAATACCAAATGAAGGACAGATTTAACATACAAAA	955	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.529	0.665	0.982	1.801	1.142	1.509
Raw	443.807	898.273	1133.979	3345.376	737.602	1048.152

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_28155.2	937	8e-25	833 - 892	100	60 / 60	plus
JLOC1	JLOC1_28155.1	951	8e-25	847 - 906	100	60 / 60	plus
Harvest21	ABC13125	1028	3e-25	956 - 1015	100	60 / 60	plus	ABC13125
Harvest35	U35_19775	1028	3e-25	956 - 1015	100	60 / 60	plus

Contig Sequence (1028 bp)

>U35_19775 1028 Hv_44K_v2
ATTACTCCCACTTAATCCCATCTCCACCTGCAGCCTGACGGGCCGGGCTCGCGGGGACTC
TGCAGCAGGAGGGGCGGCCGGCCATGGCGCTCGCATCGGGCTCCGGCGGCGACTTCTCCG
TGATGGTGATAGGGTCCGACTTCGCGGTGGACGCCGGCGCGGCGCTCCTCACCTCCCCCG
CCGACCGCGAGGAGTGGCACGACTGCGTCCCGGACCTCGGCGACGACTTCTCCGACCTCG
AGGAGCTCCAGGTCGTCCGCGTGCAGGGCGCGGACAGATCCGGCCGGGCCGTCGTCCGCG
TCGTCGGCAAGTTCTTCCCCGCTCCTGTTATAGATGGTGAACGTCTGAAGAGGTATGTGT
TTCACAAGCTCCGCACCGAGTTGCCAGAGGGTCCATTCTGCATCTTGTACGTACACACCA
CTGTACAATCAGATGACAACAATCCTGGAATGACAATCTTGAGGGGGATTTATGAAGGAC
TTCCAACTGAATACAAGGAAAGGCTGCAAATAGTGTACTTCCTGCATCCCGGGCTTTATT
CCTGGCTCGCCATGGCCACACTAGGCAGGCTCTTCTTAAGCGGAGGGTTGTACTGGAAAA
TCAAGTATGTTAGTCGGCTGGAATATCTATGGGGAGACATCAAAAAGGGTGAAGTTGAGA
TTCCAGATTTTGTTACTGAACATGACAAGATACTTGAGCACCGACCATTGACAGACTATG
GTATAGAACCTGATCCTCTGCATCTTGCGGATATACCTGCAGCAGGGTACTCGCTTGGTA
GGTATGAAGACAAATGGTCTCCTGAAGATCGATGGAATTCTCGCAATTACATGTGACATT
TTGTGCTGTTGAAGGCTTGTAAGTTGTCTGTGTGTATATATGTTATAGCAAAAGGCGATG
CATACCGGATTGTTGTGGAAACTTTGTTCATAATAAGGTAGTGTCTTGAATCATGGGCGT
CTATGCCATATTTGTAGAGACAATACCAAATGAAGGACAGATTTAACATACAAAAAAAAA
AAAAAAAA

Homology of Contig U35_19775 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g71980.1	254	4e-157	protein\|rho-GTPase-activating protein-like, putative, expressed
Brachypodium v1_2	Bradi2g60740.1	255	9e-165
Arabidopsis v10	AT3G10210.1	237	4e-104	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein \| chr3:3160416-3161579 REVERSE LENGTH=237