barSeed - Barley Seed Development Database

Probe CUST_939_PI390587928

Source Contig U35_6335

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_939_PI390587928	Hv_44K_v2	AGGGATTCTATCGCATGGACAACGTGTTGACAATCTCTCTTCACATGAACCATGGCTCTT	690	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252219.1	1588	2e-24	716 - 775	100	60 / 60	plus	ABC41217 ABC47304
MLOC	MLOC_64946.1	618	7e-23	287 - 346	98	59 / 60	plus	None
JLOC1	JLOC1_42689.1	405	4e-23	70 - 129	98	59 / 60	plus
Harvest21	ABC14812	833	3e-25	691 - 750	100	60 / 60	plus
Harvest35	U35_6335	835	3e-25	691 - 750	100	60 / 60	plus

Contig Sequence (835 bp)

>U35_6335 835 Hv_44K_v2
CTGCTCGCGCTCAGAGTCCAGCTTCAGTCAACAGACGTTTAGACATCACGAACCACCACA
GAGAACTCCGGCGGCCGGCGACGATGGACTCCTCTTCCTCCTCGGTGGCGGCGGAGGGGG
CGCCTCCGGCGGCGGAGAATCTGGCGGTGTTCTGGCACGAGGGCATGCTGGCCCACGACG
CCGGCCGCGGCCTGTTCGACTCGGGCCGCGACCCGGGCTTCCTCGACGTGCTCGACCACC
ACCCGGAGAACGCCGACCGCGTCCGCAACATGGTCTCCATCCTCCGCCGCGGGCCCATCG
CGCCCTTCCTCTCCTGGCACTCCGGCGTCCCCGCCCACGCCAGCGAGCTCCTCTCCTTCC
ACTCCCCAGAATACATTGACGAGCTCGTTCAGGCGAACGCCAGTGGAGGCAAGAAGTTGT
GTGAGGGAACTTTCTTGAACCCCGGCTCATGGGGTGCTGCGCTTCTGGCTGCTGGAACAA
CCTTATCAGCTATGAGGCACATACTAGATGGGCATGGGAAGATAGCCTATGCATTGGTCC
GTCCCCCCGGCCATCATGCACAACCGGACCATGCCGATGGTTACTGCTTTCTGAACAATG
CCGGGCTTGCTGTGCATCTGGCTCTGCATTCTGGCCGCGCAAAGGTAGCCATTGTTGATA
TTGATGTGCACTATGGGAATGGCGCTGCAGAGGGATTCTATCGCATGGACAACGTGTTGA
CAATCTCTCTTCACATGAACCATGGCTCTTGGGGTCCATCGCATCCGCAGAGTGGCTCGT
CTGATGAGATTGGGGAAGGCAGGGGGCTTGGGTACAATCTCAATATACCTTTGCC

Homology of Contig U35_6335 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g36920.1	550	3e-143	protein\|histone deacetylase, putative, expressed
Brachypodium v1_2	Bradi2g24020.1	389	1e-150
Arabidopsis v10	AT1G08460.1	377	4e-109	\| Symbols: HDA08, HDA8, ATHDA8 \| histone deacetylase 8 \| chr1:2672527-2674469 FORWARD LENGTH=377