barSeed - Barley Seed Development Database

Probe CUST_9384_PI390587928

Source Contig U35_20648

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9384_PI390587928	Hv_44K_v2	GTCACTGGTAATCGGCATATTGTTGATAATGATGAATTTGTGCTTGCTTCTTGAATTATC	398	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.462	1.839	1.429	0.510	0.116	0.135
Raw	36014.367	40510.900	27993.333	14299.967	1334.632	1654.338

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC24718	499	3e-25	391 - 450	100	60 / 60	plus	ABC24718
Harvest35	U35_20648	507	3e-25	399 - 458	100	60 / 60	plus

Contig Sequence (507 bp)

>U35_20648 507 Hv_44K_v2
GAGGCACGCAACGATCAACAAGTCCCTCCTTCAACACAAACAACTGGTTAAGATGAGGAC
CATCCACATCCAGGTGTTGCTCCTGGCCCTCGCCTTGCTCATGCTAGCATCAGGCGTGGT
AACGGAGGCGTCAATGGACGGTAGCGCCAAATTCAACTACAGGTGTGCGGCAACCCTTAT
CCCGTCACCAAAGCCATGTAACAACGACACTTGCGATATGGCATGCTTCGACCTTAGGAA
GGTGCCCAAGCAAGGCCAGTGCGATGCCGTCGGGTGCAAGTGCATGATATGCGAAGACCA
GCCTCCACTGTAAAATGAACAATAAATGGGTAGTGACTACAGCTAAGATGGGACGGCATG
CTCAACGGAATAATGCGACGAAATCTCAATTGGTAATCGTCACTGGTAATCGGCATATTG
TTGATAATGATGAATTTGTGCTTGCTTCTTGAATTATCTAAAATTATGGAAAAGCCATGC
TGCATGATGTTTATCTATGAAANAAAA

Homology of Contig U35_20648 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None