barSeed - Barley Seed Development Database

Probe CUST_9383_PI390587928

Source Contig U35_20649

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9383_PI390587928	Hv_44K_v2	TTGCTGTTGCCTTGTATACGTATCTCAGGAGTTATCACCAATCTGTATTTTTGTCAAAAA	987	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366381	4363	2e-24	1072 - 1131	100	60 / 60	plus	ABC16075 ABC21542
MLOC	MLOC_64506.3	1986	2e-24	320 - 379	100	60 / 60	plus	ABC16075 ABC21542
MLOC	MLOC_64506.2	4305	2e-24	899 - 958	100	60 / 60	plus	ABC16075 ABC21542
JLOC1	JLOC1_42366.2	4369	8e-25	900 - 959	100	60 / 60	plus
Harvest21	ABC16075	879	3e-25	710 - 769	100	60 / 60	plus	ABC16075
Harvest35	U35_20649	1157	3e-25	988 - 1047	100	60 / 60	plus

Contig Sequence (1157 bp)

>U35_20649 1157 Hv_44K_v2
CTTGGACTCATCTGACAAATTTGACCGCGCTGCTCCCGATCCCATGGCGGCGGCGGCGGC
GGGCGAGCCGGAGGTGATCCGGGACAAGGCGGCGATGCGGGCGTGGTCTCGGCGCCAGCG
CGCCGAGGGCAAGACGGTGGTCCTCGTGCCCACCATGGGCTTCCTCCACGAGGGCCACCT
CTCGCTTGTCTCCGCCGCGGCGGCCGTGCCAGGCCCCGTCGCCGTCGTCGTCTCCATCTA
CGTCAACCCCAGCCAGTTCGCCCCCACCGAGGACCTCGCCACCTACCCCTCTGACCTCGC
CGGGGATCTCCGCAAGCTCGCCTCCACCGGCGCCGTCCACGCCGTCTTCAACCCCCCGGA
CCTCTACCACCGCGGCGCAGCTGTCTCTGGCCGCTCCGCCGAGGCCTCCTCTTGCCTGGA
GGCTGGCGGGGACGGCCACGAAACGTGGATCCGGGTGGAGCGGCTGGAGAAGGGCCTGTG
TGGGGCCAGCCGGCCAGTCTTCTTCCGTGGGGTGGCCACCGTCGTCGCCAAGCTGTTCAA
CGTCGTCGAGCCCGACGTCGCCATGTTCGGCAAGAAGGATTACCAGCAATGGCGTCTCAT
CTGCCGAATGGTTCGTGACCTTGATTTTGCCATAGAGATAGTAGGATCAGAAATAATGCG
AGAAGCCGATGGTCTTGCCATGAGCTCTCGCAACGTGCACCTATCGCCTGAAGAAAGGGA
GAAGGCGTTATCCATTAGTAGGTCACTGGTAAATGCTAGAACTGCTGTGTTGAATAATAG
CAACAGTGCTAGCAAACATATAAAGGATCAGATAGTGCAGACTCTGACTGAAGCTGGTGG
TCGGGTTGATTATGTTGAGATTGTGGAGCAGGAAAGTTTGGTACCTGTGGAGACGATTGA
CCGCCCTGTTGTCATTTGTGTCGCCACATGGATTGGAAAGGTTAGATTGATTGACAATAT
CGAAATTTATATACAATCCTGAGGATTTTGCTGTTGCCTTGTATACGTATCTCAGGAGTT
ATCACCAATCTGTATTTTTGTCAAAAATAAGAGTGATGTTGTACAATGTAAGTTTGTAAC
AACCACATACAGAGAAGTTGCAAAATTTTTGAAAGATGTTTTCATTTATTGTTCAATGAT
AAAAAAAAAAAAAAAAA

Homology of Contig U35_20649 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g63490.1	314	9e-160	protein\|pantoate--beta-alanine ligase, putative, expressed
Brachypodium v1_2	Bradi1g01460.1	316	1e-176
Arabidopsis v10	AT5G48840.1	310	2e-125	\| Symbols: PANC, PTS, ATPTS \| homolog of bacterial PANC \| chr5:19803823-19805041 REVERSE LENGTH=310